miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14101 3' -56.7 NC_003521.1 + 151111 0.66 0.956983
Target:  5'- cCGCUGGGGgauggCGGGGGGAauaugGGGACu-- -3'
miRNA:   3'- -GCGGCCCUag---GCUCCUCU-----UCCUGuac -5'
14101 3' -56.7 NC_003521.1 + 217658 0.66 0.956983
Target:  5'- uGgCGGGAUCCGGGGGuuuccacGGGCGc- -3'
miRNA:   3'- gCgGCCCUAGGCUCCUcuu----CCUGUac -5'
14101 3' -56.7 NC_003521.1 + 103597 0.66 0.956621
Target:  5'- gGCCGGuGcgCgGGGGAucugaaaGAAGGGCGUc -3'
miRNA:   3'- gCGGCC-CuaGgCUCCU-------CUUCCUGUAc -5'
14101 3' -56.7 NC_003521.1 + 164027 0.66 0.956621
Target:  5'- -aCgGGGAUCUggagaugauagugGAGGAgGAAGGugGUGg -3'
miRNA:   3'- gcGgCCCUAGG-------------CUCCU-CUUCCugUAC- -5'
14101 3' -56.7 NC_003521.1 + 92078 0.66 0.953265
Target:  5'- gGaCCGGGggUCGGGGGGugcgcAGGGCGg- -3'
miRNA:   3'- gC-GGCCCuaGGCUCCUCu----UCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 66380 0.66 0.952108
Target:  5'- aCGCCcagaGGAUCaugaaaacucuggaCGAGGAGcGGGACAa- -3'
miRNA:   3'- -GCGGc---CCUAG--------------GCUCCUCuUCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 135937 0.66 0.949336
Target:  5'- gGCUGGGAUcgaaccguaucaCCGAGGGcguGGACAg- -3'
miRNA:   3'- gCGGCCCUA------------GGCUCCUcuuCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 115699 0.66 0.948931
Target:  5'- aGCCGGuGUCCGuacagcgugcccaGGGAGAagAGGAUGUu -3'
miRNA:   3'- gCGGCCcUAGGC-------------UCCUCU--UCCUGUAc -5'
14101 3' -56.7 NC_003521.1 + 19440 0.66 0.945193
Target:  5'- gGaCCGGGAagaCGAaGAGGAGGACGa- -3'
miRNA:   3'- gC-GGCCCUag-GCUcCUCUUCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 58961 0.66 0.942604
Target:  5'- uCGCCGaGGGgucgugcguggcgaaUCagccgcuaGAGGAGggGGACGa- -3'
miRNA:   3'- -GCGGC-CCU---------------AGg-------CUCCUCuuCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 98228 0.66 0.940834
Target:  5'- gGCgUGGGAggCGGGGAGGcgGGGGCGg- -3'
miRNA:   3'- gCG-GCCCUagGCUCCUCU--UCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 66997 0.66 0.940834
Target:  5'- aGCCaGaGUCUGAGGGGGAGGuGCAc- -3'
miRNA:   3'- gCGGcCcUAGGCUCCUCUUCC-UGUac -5'
14101 3' -56.7 NC_003521.1 + 212915 0.66 0.940834
Target:  5'- -uCUGGuGUCCGAGGAGGcgcuguaagAGGACAa- -3'
miRNA:   3'- gcGGCCcUAGGCUCCUCU---------UCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 98937 0.66 0.940834
Target:  5'- uCG-CGGGA-CCGAgcGGAGAcGGGugGUGg -3'
miRNA:   3'- -GCgGCCCUaGGCU--CCUCU-UCCugUAC- -5'
14101 3' -56.7 NC_003521.1 + 113846 0.66 0.940834
Target:  5'- uGCUGGGGuuucuUCCGAGcGuGgcGGugGUGu -3'
miRNA:   3'- gCGGCCCU-----AGGCUC-CuCuuCCugUAC- -5'
14101 3' -56.7 NC_003521.1 + 128117 0.67 0.937654
Target:  5'- gCGCUgcaucauGGGGUCCGAGGGcggcccgcgcucggcGAaggccugcaggcAGGGCGUGg -3'
miRNA:   3'- -GCGG-------CCCUAGGCUCCU---------------CU------------UCCUGUAC- -5'
14101 3' -56.7 NC_003521.1 + 53217 0.67 0.936258
Target:  5'- uCGCCGGGGagUCCGcGGGcGAAGcGACc-- -3'
miRNA:   3'- -GCGGCCCU--AGGCuCCU-CUUC-CUGuac -5'
14101 3' -56.7 NC_003521.1 + 209576 0.67 0.936258
Target:  5'- gGCgGGGGUCCGGGGGcgcacguagcGGAGGuaaACAc- -3'
miRNA:   3'- gCGgCCCUAGGCUCCU----------CUUCC---UGUac -5'
14101 3' -56.7 NC_003521.1 + 150537 0.67 0.936258
Target:  5'- aGCCguGGGGUCCGGcGGuGGuggugcGGGugGUGg -3'
miRNA:   3'- gCGG--CCCUAGGCU-CCuCU------UCCugUAC- -5'
14101 3' -56.7 NC_003521.1 + 113548 0.67 0.935788
Target:  5'- gCGCCGGGAcgaccaccagCgCGAGGAGGacgcgguGGGGC-UGg -3'
miRNA:   3'- -GCGGCCCUa---------G-GCUCCUCU-------UCCUGuAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.