miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14108 3' -53.9 NC_003521.1 + 174836 0.68 0.966116
Target:  5'- --gCGACuUGgugu-CCGGCGUGGCCa -3'
miRNA:   3'- ggaGCUGcACaagauGGUCGCACCGG- -5'
14108 3' -53.9 NC_003521.1 + 171054 0.66 0.992828
Target:  5'- cCCUCGucgcCGUGguaUGCCgucAGUGcGGCCa -3'
miRNA:   3'- -GGAGCu---GCACaagAUGG---UCGCaCCGG- -5'
14108 3' -53.9 NC_003521.1 + 170952 0.7 0.934646
Target:  5'- gCCUgGGCGUGgcgCUGCgCGGC--GGCCu -3'
miRNA:   3'- -GGAgCUGCACaa-GAUG-GUCGcaCCGG- -5'
14108 3' -53.9 NC_003521.1 + 170246 0.73 0.795333
Target:  5'- gCUCGGCGaccgGcUCUACCAGCGcuuucugcgcgagUGGCUg -3'
miRNA:   3'- gGAGCUGCa---CaAGAUGGUCGC-------------ACCGG- -5'
14108 3' -53.9 NC_003521.1 + 169287 0.66 0.990705
Target:  5'- uCUUCGGCGgcgggcucgGUgacgUCgGCCGGCGUcGGUCg -3'
miRNA:   3'- -GGAGCUGCa--------CA----AGaUGGUCGCA-CCGG- -5'
14108 3' -53.9 NC_003521.1 + 169143 0.71 0.9078
Target:  5'- gCCUaCGGCGUGcUC-ACCAaguGCGUGGUg -3'
miRNA:   3'- -GGA-GCUGCACaAGaUGGU---CGCACCGg -5'
14108 3' -53.9 NC_003521.1 + 164862 0.66 0.98663
Target:  5'- uCCUCGucggGgGUGUguaaCUACgAG-GUGGCCg -3'
miRNA:   3'- -GGAGC----UgCACAa---GAUGgUCgCACCGG- -5'
14108 3' -53.9 NC_003521.1 + 163799 0.67 0.976957
Target:  5'- cCUUCuACGgcUUC-ACCGGCGUGGUCa -3'
miRNA:   3'- -GGAGcUGCacAAGaUGGUCGCACCGG- -5'
14108 3' -53.9 NC_003521.1 + 153796 0.68 0.974525
Target:  5'- aCUUCaggGugGUGUUCcuggucauCCAGCacGUGGCCc -3'
miRNA:   3'- -GGAG---CugCACAAGau------GGUCG--CACCGG- -5'
14108 3' -53.9 NC_003521.1 + 153478 0.67 0.983044
Target:  5'- uCCUCGGgcucCGgcucgGgccgUCUggucagcGCCAGCGUGGaCCg -3'
miRNA:   3'- -GGAGCU----GCa----Ca---AGA-------UGGUCGCACC-GG- -5'
14108 3' -53.9 NC_003521.1 + 153405 0.74 0.769389
Target:  5'- uCCUCGugcAgGUGcgCcACCGGCGUGGUCa -3'
miRNA:   3'- -GGAGC---UgCACaaGaUGGUCGCACCGG- -5'
14108 3' -53.9 NC_003521.1 + 150925 0.68 0.969111
Target:  5'- uCCaCGGCGUGUgg-GCCgAGCGcGGUCa -3'
miRNA:   3'- -GGaGCUGCACAagaUGG-UCGCaCCGG- -5'
14108 3' -53.9 NC_003521.1 + 145275 0.68 0.962923
Target:  5'- gCCUCGGCGgccagCUcgcgcGCCGGCGUcucGCCg -3'
miRNA:   3'- -GGAGCUGCacaa-GA-----UGGUCGCAc--CGG- -5'
14108 3' -53.9 NC_003521.1 + 142469 0.69 0.952102
Target:  5'- uCUUCGggucgaaaccGCGUcGUcUCUGCCAGCGcaaccaccgucgUGGCCg -3'
miRNA:   3'- -GGAGC----------UGCA-CA-AGAUGGUCGC------------ACCGG- -5'
14108 3' -53.9 NC_003521.1 + 139185 0.74 0.760209
Target:  5'- gCUCGcugaACGUGacgcgCUACCAGCGccgGGCCc -3'
miRNA:   3'- gGAGC----UGCACaa---GAUGGUCGCa--CCGG- -5'
14108 3' -53.9 NC_003521.1 + 138008 0.71 0.899908
Target:  5'- aUCUCGGCGUcgaggugcgcgugcGUcgCUGCCGGCGcacggGGCUg -3'
miRNA:   3'- -GGAGCUGCA--------------CAa-GAUGGUCGCa----CCGG- -5'
14108 3' -53.9 NC_003521.1 + 130485 0.67 0.981302
Target:  5'- uCUUCGGCGac--CUGUCAcGCGUGGCCu -3'
miRNA:   3'- -GGAGCUGCacaaGAUGGU-CGCACCGG- -5'
14108 3' -53.9 NC_003521.1 + 129942 0.71 0.895505
Target:  5'- gCCgagaCGGCGcaGUUCUGCC-GCG-GGCCg -3'
miRNA:   3'- -GGa---GCUGCa-CAAGAUGGuCGCaCCGG- -5'
14108 3' -53.9 NC_003521.1 + 129219 0.66 0.989473
Target:  5'- --gCGugGUGggCaguCCGGCGccgcUGGCCa -3'
miRNA:   3'- ggaGCugCACaaGau-GGUCGC----ACCGG- -5'
14108 3' -53.9 NC_003521.1 + 127312 0.66 0.98663
Target:  5'- gCCUCGAUGUuggcGUUggucagcggCUGCCGGUc-GGCCa -3'
miRNA:   3'- -GGAGCUGCA----CAA---------GAUGGUCGcaCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.