miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14118 5' -60.4 NC_003521.1 + 239767 0.68 0.745437
Target:  5'- aGCugGCGCaggUCGGUGGccccGACGCCg -3'
miRNA:   3'- -UGugCGCGgagAGCCGCCu---CUGUGGa -5'
14118 5' -60.4 NC_003521.1 + 238453 0.66 0.81504
Target:  5'- gGCGCaggGCgGCCUCggcgggcggGGCGGAGACGCg- -3'
miRNA:   3'- -UGUG---CG-CGGAGag-------CCGCCUCUGUGga -5'
14118 5' -60.4 NC_003521.1 + 236463 0.68 0.727931
Target:  5'- gACGCGgGCCgcgaugagcgaaccgCcggCGGCGGuGGCGCCa -3'
miRNA:   3'- -UGUGCgCGGa--------------Ga--GCCGCCuCUGUGGa -5'
14118 5' -60.4 NC_003521.1 + 235364 0.67 0.789847
Target:  5'- cGCACGCGCUcuucaccaUCUgGGaCGGGauggaguccGACGCCg -3'
miRNA:   3'- -UGUGCGCGG--------AGAgCC-GCCU---------CUGUGGa -5'
14118 5' -60.4 NC_003521.1 + 226697 0.68 0.727001
Target:  5'- uCACGUGCCagcccUUCGGCGGAcccaGACACa- -3'
miRNA:   3'- uGUGCGCGGa----GAGCCGCCU----CUGUGga -5'
14118 5' -60.4 NC_003521.1 + 226344 0.7 0.622988
Target:  5'- uGCGCGCGCCccgcggguagcgccgCgggagCGGCGGcuGACGCCg -3'
miRNA:   3'- -UGUGCGCGGa--------------Ga----GCCGCCu-CUGUGGa -5'
14118 5' -60.4 NC_003521.1 + 224090 0.66 0.831108
Target:  5'- gGCGCGCGCg-C-CGGCGGu--CGCCg -3'
miRNA:   3'- -UGUGCGCGgaGaGCCGCCucuGUGGa -5'
14118 5' -60.4 NC_003521.1 + 223589 0.69 0.689319
Target:  5'- -gGCGCGCCUCcaccUCGGCcuccGAGACcucgGCCUc -3'
miRNA:   3'- ugUGCGCGGAG----AGCCGc---CUCUG----UGGA- -5'
14118 5' -60.4 NC_003521.1 + 219647 0.75 0.32891
Target:  5'- -aACGCGU--CUCGGCGGAGugACCa -3'
miRNA:   3'- ugUGCGCGgaGAGCCGCCUCugUGGa -5'
14118 5' -60.4 NC_003521.1 + 217556 0.67 0.789847
Target:  5'- uGCACGUcgucGCCgUCaUGGCGGAGAuCAUCa -3'
miRNA:   3'- -UGUGCG----CGG-AGaGCCGCCUCU-GUGGa -5'
14118 5' -60.4 NC_003521.1 + 209546 0.66 0.838905
Target:  5'- uUAUGCGCC---CGGCGGGGugGCg- -3'
miRNA:   3'- uGUGCGCGGagaGCCGCCUCugUGga -5'
14118 5' -60.4 NC_003521.1 + 209076 0.67 0.754526
Target:  5'- -gAUGUGCCggUCgaggCGGCGGAGGCggugGCCg -3'
miRNA:   3'- ugUGCGCGG--AGa---GCCGCCUCUG----UGGa -5'
14118 5' -60.4 NC_003521.1 + 207063 0.66 0.838905
Target:  5'- ---aGCaGCCUCU-GGCGGGGACuacgcgacGCCUg -3'
miRNA:   3'- ugugCG-CGGAGAgCCGCCUCUG--------UGGA- -5'
14118 5' -60.4 NC_003521.1 + 205328 0.73 0.429305
Target:  5'- gACACccuacgGCGCCUcCUCGGCGGcGGCAgCUg -3'
miRNA:   3'- -UGUG------CGCGGA-GAGCCGCCuCUGUgGA- -5'
14118 5' -60.4 NC_003521.1 + 204067 0.66 0.846534
Target:  5'- cACGCGCGUC-CUUGGacagcgagaGGAagGGCACCg -3'
miRNA:   3'- -UGUGCGCGGaGAGCCg--------CCU--CUGUGGa -5'
14118 5' -60.4 NC_003521.1 + 202206 0.68 0.745437
Target:  5'- -gGCGCGCCUCUaauaacgcauaCGGCGaacacccaGGGACACg- -3'
miRNA:   3'- ugUGCGCGGAGA-----------GCCGC--------CUCUGUGga -5'
14118 5' -60.4 NC_003521.1 + 201003 0.73 0.420958
Target:  5'- aGCAgGCGCCa-UCGGCGGAGGacCGCCc -3'
miRNA:   3'- -UGUgCGCGGagAGCCGCCUCU--GUGGa -5'
14118 5' -60.4 NC_003521.1 + 196557 0.66 0.81504
Target:  5'- uGCACGCugaucuCCUC-CGGCGu-GACGCCg -3'
miRNA:   3'- -UGUGCGc-----GGAGaGCCGCcuCUGUGGa -5'
14118 5' -60.4 NC_003521.1 + 195402 0.66 0.838905
Target:  5'- gAC-CGCGCCga-CGGCGG--GCACCg -3'
miRNA:   3'- -UGuGCGCGGagaGCCGCCucUGUGGa -5'
14118 5' -60.4 NC_003521.1 + 195308 0.73 0.420958
Target:  5'- cCACGCccaguCCUCUCGGCGGAG-CGCa- -3'
miRNA:   3'- uGUGCGc----GGAGAGCCGCCUCuGUGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.