miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1412 5' -58.7 NC_001335.1 + 27147 0.66 0.549514
Target:  5'- ---cGCCCucacagGCGGacaggcUCAGgGUGGCGGCa -3'
miRNA:   3'- gauaCGGG------UGCC------AGUCgCGCUGCCGg -5'
1412 5' -58.7 NC_001335.1 + 14392 0.66 0.549514
Target:  5'- -gGUGCUacCGGUUGGacgaGCGuCGGCCa -3'
miRNA:   3'- gaUACGGguGCCAGUCg---CGCuGCCGG- -5'
1412 5' -58.7 NC_001335.1 + 1148 0.66 0.549514
Target:  5'- ---aGCCCcCGGaucgggCGGCGUaGGCGGCg -3'
miRNA:   3'- gauaCGGGuGCCa-----GUCGCG-CUGCCGg -5'
1412 5' -58.7 NC_001335.1 + 1377 0.66 0.539047
Target:  5'- ---cGCCCACcgaugagaAGCGCGA-GGCCa -3'
miRNA:   3'- gauaCGGGUGccag----UCGCGCUgCCGG- -5'
1412 5' -58.7 NC_001335.1 + 47059 0.66 0.528649
Target:  5'- ---cGCUUGCGGUuaCGGUGCGGCuGcGCCg -3'
miRNA:   3'- gauaCGGGUGCCA--GUCGCGCUG-C-CGG- -5'
1412 5' -58.7 NC_001335.1 + 13326 0.66 0.527614
Target:  5'- -cGUGCCgACguaccagacuGGUUGGCuaccuggaaccguGCGAUGGCCg -3'
miRNA:   3'- gaUACGGgUG----------CCAGUCG-------------CGCUGCCGG- -5'
1412 5' -58.7 NC_001335.1 + 26025 0.66 0.518326
Target:  5'- cCUAccCCCACGGcaUCAuCGCGAUGGUg -3'
miRNA:   3'- -GAUacGGGUGCC--AGUcGCGCUGCCGg -5'
1412 5' -58.7 NC_001335.1 + 38816 0.66 0.518326
Target:  5'- ---gGCCgGCGGguUCAGCagguacuCGAUGGCCc -3'
miRNA:   3'- gauaCGGgUGCC--AGUCGc------GCUGCCGG- -5'
1412 5' -58.7 NC_001335.1 + 20234 0.66 0.508085
Target:  5'- ---cGUCCgagggAUGGUCcaacuGGCcgGCGACGGCCa -3'
miRNA:   3'- gauaCGGG-----UGCCAG-----UCG--CGCUGCCGG- -5'
1412 5' -58.7 NC_001335.1 + 5567 0.66 0.497929
Target:  5'- -gAUGCCCAgCaGUgcCGGgGCGGCGGUg -3'
miRNA:   3'- gaUACGGGU-GcCA--GUCgCGCUGCCGg -5'
1412 5' -58.7 NC_001335.1 + 9086 0.66 0.497929
Target:  5'- ---cGCCCGagcuuCGGUCGaugaccGaCGCGGCGGCg -3'
miRNA:   3'- gauaCGGGU-----GCCAGU------C-GCGCUGCCGg -5'
1412 5' -58.7 NC_001335.1 + 31843 0.66 0.497929
Target:  5'- ---gGCCCGCGaGgCAGCGCGAgcugucCuGCCg -3'
miRNA:   3'- gauaCGGGUGC-CaGUCGCGCU------GcCGG- -5'
1412 5' -58.7 NC_001335.1 + 32683 0.67 0.487866
Target:  5'- ---gGCCaACGG-CGGCgGCGGUGGCCa -3'
miRNA:   3'- gauaCGGgUGCCaGUCG-CGCUGCCGG- -5'
1412 5' -58.7 NC_001335.1 + 25832 0.67 0.477899
Target:  5'- cCUGUcGUUCACGGcucUCAGCGagcuggcuGCGGCCa -3'
miRNA:   3'- -GAUA-CGGGUGCC---AGUCGCgc------UGCCGG- -5'
1412 5' -58.7 NC_001335.1 + 24106 0.67 0.448624
Target:  5'- -gGUGCCCA-GGUCuccGCacagaGCGGCGGUg -3'
miRNA:   3'- gaUACGGGUgCCAGu--CG-----CGCUGCCGg -5'
1412 5' -58.7 NC_001335.1 + 13693 0.67 0.448624
Target:  5'- ---cGCCCaACGcGUUGGCGCuugaguuCGGCCa -3'
miRNA:   3'- gauaCGGG-UGC-CAGUCGCGcu-----GCCGG- -5'
1412 5' -58.7 NC_001335.1 + 41917 0.67 0.448624
Target:  5'- --uUGCCCA-GGaUCAGC-CGuuuGCGGCCu -3'
miRNA:   3'- gauACGGGUgCC-AGUCGcGC---UGCCGG- -5'
1412 5' -58.7 NC_001335.1 + 39866 0.67 0.439088
Target:  5'- ---cGCaCCACGGUCuGggaaGCGuuGGCCa -3'
miRNA:   3'- gauaCG-GGUGCCAGuCg---CGCugCCGG- -5'
1412 5' -58.7 NC_001335.1 + 7862 0.68 0.429669
Target:  5'- aCUGga-CCGCGcucGUCGGCugccgugucaGCGACGGCCu -3'
miRNA:   3'- -GAUacgGGUGC---CAGUCG----------CGCUGCCGG- -5'
1412 5' -58.7 NC_001335.1 + 19368 0.68 0.429669
Target:  5'- ---aGCCC-CaG-CAGCGCGAccaCGGCCu -3'
miRNA:   3'- gauaCGGGuGcCaGUCGCGCU---GCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.