miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14120 5' -54.3 NC_003521.1 + 2238 0.66 0.976609
Target:  5'- -aGUGCuGGaCGAGCUGG-GUGCCgucuucGGCu -3'
miRNA:   3'- caUACG-CC-GUUCGACCuCAUGG------UCGu -5'
14120 5' -54.3 NC_003521.1 + 91964 0.66 0.976609
Target:  5'- ---gGCuGGCGuAGCUGGcgcGGUGCaCGGCAc -3'
miRNA:   3'- cauaCG-CCGU-UCGACC---UCAUG-GUCGU- -5'
14120 5' -54.3 NC_003521.1 + 207929 0.66 0.976609
Target:  5'- ---gGCGGCGGGCacggcGGcAGcACCGGCGg -3'
miRNA:   3'- cauaCGCCGUUCGa----CC-UCaUGGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 202466 0.66 0.976609
Target:  5'- -aGUGCuGGaCGAGCUGG-GUGCCgucuucGGCu -3'
miRNA:   3'- caUACG-CC-GUUCGACCuCAUGG------UCGu -5'
14120 5' -54.3 NC_003521.1 + 191087 0.66 0.976609
Target:  5'- gGUGgcgGCGGCGGGCUGcGucucGUccACCAGUu -3'
miRNA:   3'- -CAUa--CGCCGUUCGAC-Cu---CA--UGGUCGu -5'
14120 5' -54.3 NC_003521.1 + 128848 0.66 0.976609
Target:  5'- -gGUGCGGuUGAGCaGGAacagcgugGCCAGCAg -3'
miRNA:   3'- caUACGCC-GUUCGaCCUca------UGGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 131054 0.66 0.976609
Target:  5'- ---gGCGGCGGGCcucUGGAcgcgGUGgCGGCGa -3'
miRNA:   3'- cauaCGCCGUUCG---ACCU----CAUgGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 168526 0.66 0.976609
Target:  5'- ---cGCcaGCAGGCUGGcg-GCCAGCGc -3'
miRNA:   3'- cauaCGc-CGUUCGACCucaUGGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 168814 0.66 0.974067
Target:  5'- ---cGCGGCGcauccugaAGCUGGGcc-CCAGCGa -3'
miRNA:   3'- cauaCGCCGU--------UCGACCUcauGGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 53398 0.66 0.974067
Target:  5'- ---cGCGGCGAGCaGGGGaugGCgcguCGGCAg -3'
miRNA:   3'- cauaCGCCGUUCGaCCUCa--UG----GUCGU- -5'
14120 5' -54.3 NC_003521.1 + 193383 0.66 0.974067
Target:  5'- -aGUGCGGCGcccGGCUGcauGUGCCcuGGCc -3'
miRNA:   3'- caUACGCCGU---UCGACcu-CAUGG--UCGu -5'
14120 5' -54.3 NC_003521.1 + 7988 0.66 0.971329
Target:  5'- ---cGCGGC-GGCgggGGAgGUACCggGGCAg -3'
miRNA:   3'- cauaCGCCGuUCGa--CCU-CAUGG--UCGU- -5'
14120 5' -54.3 NC_003521.1 + 207495 0.66 0.971329
Target:  5'- -gGUGCcGCccAGCgGGuGGUGCCAGCAg -3'
miRNA:   3'- caUACGcCGu-UCGaCC-UCAUGGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 69270 0.66 0.971329
Target:  5'- ---cGUGGCAAGC-GGucuGUuuaACCAGCGc -3'
miRNA:   3'- cauaCGCCGUUCGaCCu--CA---UGGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 179871 0.66 0.971329
Target:  5'- -gAUGCGGCAcAGCUGGA---UgAGCGu -3'
miRNA:   3'- caUACGCCGU-UCGACCUcauGgUCGU- -5'
14120 5' -54.3 NC_003521.1 + 7747 0.66 0.968391
Target:  5'- ---aGCGGCGgaGGCggcGGcAGUcCCAGCAg -3'
miRNA:   3'- cauaCGCCGU--UCGa--CC-UCAuGGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 151592 0.66 0.968391
Target:  5'- ---aGCGGUcuccgcGCUGGAGgucgGCCGGUg -3'
miRNA:   3'- cauaCGCCGuu----CGACCUCa---UGGUCGu -5'
14120 5' -54.3 NC_003521.1 + 65110 0.66 0.968391
Target:  5'- ---aGCGGCGccgacAGCUGGAcgaGUACCGaCAg -3'
miRNA:   3'- cauaCGCCGU-----UCGACCU---CAUGGUcGU- -5'
14120 5' -54.3 NC_003521.1 + 129092 0.66 0.968391
Target:  5'- cGUAcUGCaGGCuguGGgUGGcGUGCCGGCGc -3'
miRNA:   3'- -CAU-ACG-CCGu--UCgACCuCAUGGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 16515 0.66 0.965244
Target:  5'- --cUGCGGCGcucggcucGGCUGGAGcgcaacggacccUGCguGCAc -3'
miRNA:   3'- cauACGCCGU--------UCGACCUC------------AUGguCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.