miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14136 5' -54.5 NC_003521.1 + 100701 0.66 0.981756
Target:  5'- cGGAGGCGCcgccGCGGCcgCUgauGGAGgAg -3'
miRNA:   3'- -CCUCUGCGa---CGCCGa-GAaguUCUCgU- -5'
14136 5' -54.5 NC_003521.1 + 171653 0.66 0.981756
Target:  5'- ---cGCGCcGCGGCgggCgUCGGGAGCGu -3'
miRNA:   3'- ccucUGCGaCGCCGa--GaAGUUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 201617 0.66 0.979668
Target:  5'- cGAGcccGCGCUGCuGCggacgCUgacCAAGAGCGa -3'
miRNA:   3'- cCUC---UGCGACGcCGa----GAa--GUUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 66959 0.66 0.979668
Target:  5'- --uGGCGCUGCGGCaggaCGAGcGCAg -3'
miRNA:   3'- ccuCUGCGACGCCGagaaGUUCuCGU- -5'
14136 5' -54.5 NC_003521.1 + 1390 0.66 0.979668
Target:  5'- cGAGcccGCGCUGCuGCggacgCUgacCAAGAGCGa -3'
miRNA:   3'- cCUC---UGCGACGcCGa----GAa--GUUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 61806 0.66 0.979668
Target:  5'- cGGAaaaGACGUUGCGuGauuUCUUCGAGGGg- -3'
miRNA:   3'- -CCU---CUGCGACGC-Cg--AGAAGUUCUCgu -5'
14136 5' -54.5 NC_003521.1 + 127556 0.66 0.97945
Target:  5'- -aAGACGCUGUccgaguuGGCaaUCUUCcacagcAAGAGCAg -3'
miRNA:   3'- ccUCUGCGACG-------CCG--AGAAG------UUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 6498 0.66 0.977408
Target:  5'- cGGAGGCGgUGacggcagaGGCUCaccggugaCGAGGGCGg -3'
miRNA:   3'- -CCUCUGCgACg-------CCGAGaa------GUUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 73679 0.66 0.977408
Target:  5'- cGAGGCGCccaaGGCgCUgcUCAAGAGCu -3'
miRNA:   3'- cCUCUGCGacg-CCGaGA--AGUUCUCGu -5'
14136 5' -54.5 NC_003521.1 + 197285 0.66 0.974967
Target:  5'- cGGGGA-GCgggaggGCGGCUCgaCGGGAGa- -3'
miRNA:   3'- -CCUCUgCGa-----CGCCGAGaaGUUCUCgu -5'
14136 5' -54.5 NC_003521.1 + 96659 0.66 0.974967
Target:  5'- aGGcGGCGC--CGGCgugCUUgAAGAGCAa -3'
miRNA:   3'- -CCuCUGCGacGCCGa--GAAgUUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 229625 0.66 0.974967
Target:  5'- uGAGGCGC-GaCGGCUCUgaagaCAGGuGCu -3'
miRNA:   3'- cCUCUGCGaC-GCCGAGAa----GUUCuCGu -5'
14136 5' -54.5 NC_003521.1 + 7708 0.66 0.974967
Target:  5'- -aAGACaCUGgGGCUCUUUuugggugggGAGGGCGg -3'
miRNA:   3'- ccUCUGcGACgCCGAGAAG---------UUCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 15869 0.66 0.974967
Target:  5'- aGGAGACGgaGCugguGCUCUguauGGGCGg -3'
miRNA:   3'- -CCUCUGCgaCGc---CGAGAaguuCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 110013 0.66 0.974967
Target:  5'- gGGAGAUGUgcaccCGGCUC-UCGuGGGCGc -3'
miRNA:   3'- -CCUCUGCGac---GCCGAGaAGUuCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 168465 0.66 0.974967
Target:  5'- uGGGGCGCUgGUGGCUggUCAGGucgaucaugGGCGg -3'
miRNA:   3'- cCUCUGCGA-CGCCGAgaAGUUC---------UCGU- -5'
14136 5' -54.5 NC_003521.1 + 59656 0.66 0.974967
Target:  5'- cGGcAGACGCUgGCGcGC-CUggAGGAGCu -3'
miRNA:   3'- -CC-UCUGCGA-CGC-CGaGAagUUCUCGu -5'
14136 5' -54.5 NC_003521.1 + 183910 0.66 0.96952
Target:  5'- uGGAGGCgguGCUGCGGCgCUgucgCGAcGGCc -3'
miRNA:   3'- -CCUCUG---CGACGCCGaGAa---GUUcUCGu -5'
14136 5' -54.5 NC_003521.1 + 35210 0.66 0.96952
Target:  5'- aGGGGGCGC-GCGGgUCggaucGAGCGu -3'
miRNA:   3'- -CCUCUGCGaCGCCgAGaaguuCUCGU- -5'
14136 5' -54.5 NC_003521.1 + 60818 0.66 0.96952
Target:  5'- cGAGcCGCUGCuGGC-CUUCAGuAGCc -3'
miRNA:   3'- cCUCuGCGACG-CCGaGAAGUUcUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.