miRNA display CGI


Results 1 - 20 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14147 5' -60.2 NC_003521.1 + 107004 1.07 0.002243
Target:  5'- uCAGCAUCAGCGCCAGACAGGCGGCCAc -3'
miRNA:   3'- -GUCGUAGUCGCGGUCUGUCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 109340 0.71 0.519109
Target:  5'- aGGCggCAGCaGCCGGcGCAGGaGGCCGa -3'
miRNA:   3'- gUCGuaGUCG-CGGUC-UGUCCgCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 76365 0.71 0.519109
Target:  5'- gCGGCAgCGGCGaCCGuGACGGccGCGGCCGc -3'
miRNA:   3'- -GUCGUaGUCGC-GGU-CUGUC--CGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 108132 0.66 0.820694
Target:  5'- -cGCGUCc-CGCCAGcCGGGCGcgaGCCGa -3'
miRNA:   3'- guCGUAGucGCGGUCuGUCCGC---CGGU- -5'
14147 5' -60.2 NC_003521.1 + 23091 0.74 0.372025
Target:  5'- -uGCGUCcGUgGCCGGGCGGGgGGCCGg -3'
miRNA:   3'- guCGUAGuCG-CGGUCUGUCCgCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 75034 0.73 0.412346
Target:  5'- -uGCGacggCAGCGCCAG-CGGGCuGGCCu -3'
miRNA:   3'- guCGUa---GUCGCGGUCuGUCCG-CCGGu -5'
14147 5' -60.2 NC_003521.1 + 106295 0.73 0.420729
Target:  5'- gGGCAaCAGCaaCCAGGC-GGCGGCCGu -3'
miRNA:   3'- gUCGUaGUCGc-GGUCUGuCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 107337 0.72 0.436936
Target:  5'- gCAGCAgCGGCGCCAGGugauccucgaccuCGGGCGGaCAc -3'
miRNA:   3'- -GUCGUaGUCGCGGUCU-------------GUCCGCCgGU- -5'
14147 5' -60.2 NC_003521.1 + 166631 0.72 0.455259
Target:  5'- aCGGCGUCGggccgcGCGCCGGGCGccgcggcgcaGCGGCCAg -3'
miRNA:   3'- -GUCGUAGU------CGCGGUCUGUc---------CGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 184369 0.71 0.509754
Target:  5'- uGGCG-CGGCGCCucucGGACcugggccacgAGGCGGCCu -3'
miRNA:   3'- gUCGUaGUCGCGG----UCUG----------UCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 172076 0.72 0.476697
Target:  5'- uCAGgacCGUCAGCGgCGGcgugaugaaguccguGCGGGCGGCCGa -3'
miRNA:   3'- -GUC---GUAGUCGCgGUC---------------UGUCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 211707 0.72 0.446482
Target:  5'- gUAGCAgcgCAGCGCgCGGAUGGuGCGGCgAa -3'
miRNA:   3'- -GUCGUa--GUCGCG-GUCUGUC-CGCCGgU- -5'
14147 5' -60.2 NC_003521.1 + 95718 0.76 0.293174
Target:  5'- cCGGUAguuaGGCGCCAGguccaGCAGGCGGCUg -3'
miRNA:   3'- -GUCGUag--UCGCGGUC-----UGUCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 108028 0.72 0.482135
Target:  5'- --uCGUCGGCGUCAGGC-GGCGGCgGg -3'
miRNA:   3'- gucGUAGUCGCGGUCUGuCCGCCGgU- -5'
14147 5' -60.2 NC_003521.1 + 103218 0.76 0.293174
Target:  5'- aGGCGUcCAGCGCgCGGuACAGGuCGGCCu -3'
miRNA:   3'- gUCGUA-GUCGCG-GUC-UGUCC-GCCGGu -5'
14147 5' -60.2 NC_003521.1 + 77730 0.72 0.437799
Target:  5'- uGGCGcUGGCGCCcgaGGACGGGCcGGCCu -3'
miRNA:   3'- gUCGUaGUCGCGG---UCUGUCCG-CCGGu -5'
14147 5' -60.2 NC_003521.1 + 98477 0.72 0.482135
Target:  5'- gCGGCcgCGGCgGCCGuGGC-GGCGGCCu -3'
miRNA:   3'- -GUCGuaGUCG-CGGU-CUGuCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 201378 0.71 0.519109
Target:  5'- gCGGCccUCGGCGCCGGGCu--CGGCCGg -3'
miRNA:   3'- -GUCGu-AGUCGCGGUCUGuccGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 236491 0.74 0.364289
Target:  5'- gCGGCggUGGCGCCAGGCAuGGaCGGUCGa -3'
miRNA:   3'- -GUCGuaGUCGCGGUCUGU-CC-GCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 102967 0.73 0.412346
Target:  5'- gGGCGUCGGgGCuCuGGCgGGGCGGCCc -3'
miRNA:   3'- gUCGUAGUCgCG-GuCUG-UCCGCCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.