miRNA display CGI


Results 21 - 40 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14148 3' -53.8 NC_003521.1 + 209059 0.66 0.990654
Target:  5'- gCGACUggcGCGACCCCGaugugccggUCGAGgcggcggaggcggugGCCgcgGCg -3'
miRNA:   3'- -GUUGG---UGCUGGGGU---------AGCUCa--------------UGGa--CG- -5'
14148 3' -53.8 NC_003521.1 + 208888 0.69 0.932975
Target:  5'- --uCCugGACCCCGaggagcgCGAGgucaucgcgcgcUGCCUGCc -3'
miRNA:   3'- guuGGugCUGGGGUa------GCUC------------AUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 207286 0.66 0.984687
Target:  5'- cCGGCCGCcuuuacuucaucGGCCUCAUCagugucuauGAGUGCgUGCc -3'
miRNA:   3'- -GUUGGUG------------CUGGGGUAG---------CUCAUGgACG- -5'
14148 3' -53.8 NC_003521.1 + 206475 0.66 0.987882
Target:  5'- gGACCugGGCCUCA-CGGccuccgcCCUGCg -3'
miRNA:   3'- gUUGGugCUGGGGUaGCUcau----GGACG- -5'
14148 3' -53.8 NC_003521.1 + 206212 0.79 0.48086
Target:  5'- -cGCUGCGACCCCGUgcaCGAGUccaucugcgcgcGCCUGCa -3'
miRNA:   3'- guUGGUGCUGGGGUA---GCUCA------------UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 205888 0.66 0.985706
Target:  5'- -cGCCGCGACUacgagggucugcgCCGcuaccugcugcgcuUCGAGggcGCCUGCg -3'
miRNA:   3'- guUGGUGCUGG-------------GGU--------------AGCUCa--UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 204987 0.66 0.987882
Target:  5'- gCGACCuCGAUCCCGaugCGGGagACCcGCu -3'
miRNA:   3'- -GUUGGuGCUGGGGUa--GCUCa-UGGaCG- -5'
14148 3' -53.8 NC_003521.1 + 204891 0.72 0.825858
Target:  5'- -cACUACGuCCCCGUUGAGgACCagGCg -3'
miRNA:   3'- guUGGUGCuGGGGUAGCUCaUGGa-CG- -5'
14148 3' -53.8 NC_003521.1 + 202635 0.68 0.970966
Target:  5'- uCGACCgcgagcacugggaGCGGCCCCGcUGGGacgcCCUGCa -3'
miRNA:   3'- -GUUGG-------------UGCUGGGGUaGCUCau--GGACG- -5'
14148 3' -53.8 NC_003521.1 + 202583 0.69 0.937795
Target:  5'- gGGCCGCGucucGCCCCGcccgcCGAGgccgcCCUGCg -3'
miRNA:   3'- gUUGGUGC----UGGGGUa----GCUCau---GGACG- -5'
14148 3' -53.8 NC_003521.1 + 201392 0.66 0.984687
Target:  5'- gAGCCACGGCgCCGccuaCGGGacuggacgGCCUGUg -3'
miRNA:   3'- gUUGGUGCUGgGGUa---GCUCa-------UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 201266 0.7 0.91714
Target:  5'- gCAGCCAgaUGGCCggCGUCGGGgccaccgACCUGCg -3'
miRNA:   3'- -GUUGGU--GCUGGg-GUAGCUCa------UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 200444 0.67 0.976427
Target:  5'- -cGCCACGACgCCgaCAUCGuggagaAGgcCCUGCg -3'
miRNA:   3'- guUGGUGCUG-GG--GUAGC------UCauGGACG- -5'
14148 3' -53.8 NC_003521.1 + 196115 0.72 0.834064
Target:  5'- -cACCAgGAUCUgGcgcgucUCGGGUACCUGCg -3'
miRNA:   3'- guUGGUgCUGGGgU------AGCUCAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 193916 0.66 0.989272
Target:  5'- uCAuCgACGACCCCuucgaCGAGUGCCc-- -3'
miRNA:   3'- -GUuGgUGCUGGGGua---GCUCAUGGacg -5'
14148 3' -53.8 NC_003521.1 + 193317 0.66 0.987882
Target:  5'- uCAGCUACGGCUgCAUCGcGGU-CCggGCc -3'
miRNA:   3'- -GUUGGUGCUGGgGUAGC-UCAuGGa-CG- -5'
14148 3' -53.8 NC_003521.1 + 190953 0.66 0.985372
Target:  5'- -cGCCACGACCgCCAUcaugagcaugcuggaCGAG-GCCgagcgGCa -3'
miRNA:   3'- guUGGUGCUGG-GGUA---------------GCUCaUGGa----CG- -5'
14148 3' -53.8 NC_003521.1 + 186710 0.69 0.932975
Target:  5'- aCGACgACGGCUCCGgucUgGAGaacgACCUGCu -3'
miRNA:   3'- -GUUGgUGCUGGGGU---AgCUCa---UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 185186 0.74 0.735814
Target:  5'- gCAACCGCGGCUUCcUCGuuUACUUGCa -3'
miRNA:   3'- -GUUGGUGCUGGGGuAGCucAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 184391 0.68 0.958521
Target:  5'- gGGCCACGaggcgGCCUucgaCcgCGAGUACCgGCg -3'
miRNA:   3'- gUUGGUGC-----UGGG----GuaGCUCAUGGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.