Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14148 | 5' | -58.5 | NC_003521.1 | + | 172754 | 0.67 | 0.840473 |
Target: 5'- uUGCGGGGCCcggcauucuggcUGcCACCGGGggCGCCg- -3' miRNA: 3'- gACGUCUUGG------------AC-GUGGCCCa-GUGGga -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 166623 | 0.66 | 0.88407 |
Target: 5'- -gGCAGAagacggcgucggGCCgcGCGCCGGG-CGCCg- -3' miRNA: 3'- gaCGUCU------------UGGa-CGUGGCCCaGUGGga -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 166171 | 0.66 | 0.890641 |
Target: 5'- -cGCAGGGCCgagcgGCGCUccaGGGUCccgcgcaccACCCc -3' miRNA: 3'- gaCGUCUUGGa----CGUGG---CCCAG---------UGGGa -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 161192 | 0.78 | 0.282425 |
Target: 5'- -aGCAGAcgacGCCgagGCGCCGcGGUCGCCCc -3' miRNA: 3'- gaCGUCU----UGGa--CGUGGC-CCAGUGGGa -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 156380 | 0.68 | 0.81624 |
Target: 5'- cCUGCAGcGCCUG-ACCGaGGgccgcuucgcCACCCUg -3' miRNA: 3'- -GACGUCuUGGACgUGGC-CCa---------GUGGGA- -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 141294 | 0.66 | 0.890641 |
Target: 5'- gCUGCGGcacggucuccGACCUGaucCUGGG-CGCCCUc -3' miRNA: 3'- -GACGUC----------UUGGACgu-GGCCCaGUGGGA- -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 141124 | 0.66 | 0.888038 |
Target: 5'- cCUGCAGAagcggccgcccgagACCuucggcaaccccgUGCACCGGGcCAUggCCUa -3' miRNA: 3'- -GACGUCU--------------UGG-------------ACGUGGCCCaGUG--GGA- -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 140701 | 0.67 | 0.840473 |
Target: 5'- -cGCAGGACCgccaGC-CgCGGGUCGCauCCUg -3' miRNA: 3'- gaCGUCUUGGa---CGuG-GCCCAGUG--GGA- -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 140627 | 0.76 | 0.38593 |
Target: 5'- cCUGCagcgguacacggccgAGAGCCUGCGCCuGG-CGCCCUa -3' miRNA: 3'- -GACG---------------UCUUGGACGUGGcCCaGUGGGA- -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 138035 | 0.68 | 0.781807 |
Target: 5'- gCUGcCGGcGCaCgggGCugUGGGUCGCCCg -3' miRNA: 3'- -GAC-GUCuUG-Ga--CGugGCCCAGUGGGa -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 137316 | 0.68 | 0.781807 |
Target: 5'- -cGCGc-GCCUGCuGCUGGGcUCGCCCUu -3' miRNA: 3'- gaCGUcuUGGACG-UGGCCC-AGUGGGA- -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 129914 | 0.67 | 0.853518 |
Target: 5'- gUGCGGAACa-GCACCGuGGUCAaagagaacgccaucUCCUu -3' miRNA: 3'- gACGUCUUGgaCGUGGC-CCAGU--------------GGGA- -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 126963 | 0.71 | 0.639262 |
Target: 5'- -cGCGGAACCcGCGCCGucGUCGCCg- -3' miRNA: 3'- gaCGUCUUGGaCGUGGCc-CAGUGGga -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 123199 | 0.68 | 0.772869 |
Target: 5'- -gGCGGAACga-CACCGGGUCGCUg- -3' miRNA: 3'- gaCGUCUUGgacGUGGCCCAGUGGga -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 120963 | 0.66 | 0.88407 |
Target: 5'- aCUGCGG-ACCgagGC-CCGGGUggaUAUCCg -3' miRNA: 3'- -GACGUCuUGGa--CGuGGCCCA---GUGGGa -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 120606 | 0.73 | 0.513426 |
Target: 5'- aCUGcCAGGugUUGCGCCuGGUCACCa- -3' miRNA: 3'- -GAC-GUCUugGACGUGGcCCAGUGGga -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 116024 | 0.7 | 0.668694 |
Target: 5'- -aGCuGGugCUGCcCUGGGUCAUCCc -3' miRNA: 3'- gaCGuCUugGACGuGGCCCAGUGGGa -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 114674 | 0.66 | 0.88407 |
Target: 5'- gUGCAGGACCUGUucGCCGucUUcCCCa -3' miRNA: 3'- gACGUCUUGGACG--UGGCccAGuGGGa -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 113214 | 0.68 | 0.807845 |
Target: 5'- -aGCAGuACCUGCGCuCGGGccUCACgUg -3' miRNA: 3'- gaCGUCuUGGACGUG-GCCC--AGUGgGa -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 112680 | 0.68 | 0.807845 |
Target: 5'- cCUGCAGGccuucGCCgaGCG-CGGGcCGCCCUc -3' miRNA: 3'- -GACGUCU-----UGGa-CGUgGCCCaGUGGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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