miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14151 3' -51.7 NC_003521.1 + 137996 0.65 0.996551
Target:  5'- -gCGCGCAGGucgaucucggcguCGAgGUGCgcgugCGUCGCu -3'
miRNA:   3'- uaGCGCGUCUu------------GUUgCACGa----GUAGUG- -5'
14151 3' -51.7 NC_003521.1 + 149814 0.66 0.996206
Target:  5'- -aCGCGCAGAucacuuuCAACGUGgUugccagguaacCGUCGCc -3'
miRNA:   3'- uaGCGCGUCUu------GUUGCACgA-----------GUAGUG- -5'
14151 3' -51.7 NC_003521.1 + 82841 0.66 0.995569
Target:  5'- aAUCGcCGCGGGcgGCGGCGUcGCuaccagcgccgUCGUCGCc -3'
miRNA:   3'- -UAGC-GCGUCU--UGUUGCA-CG-----------AGUAGUG- -5'
14151 3' -51.7 NC_003521.1 + 26245 0.66 0.995569
Target:  5'- cGUCGCGCacGGAACGccaGCGcUGCUgCAcCACc -3'
miRNA:   3'- -UAGCGCG--UCUUGU---UGC-ACGA-GUaGUG- -5'
14151 3' -51.7 NC_003521.1 + 155036 0.66 0.995569
Target:  5'- -aCaCGCAGAACAagaGCGUGCguaaaggCAUCGa -3'
miRNA:   3'- uaGcGCGUCUUGU---UGCACGa------GUAGUg -5'
14151 3' -51.7 NC_003521.1 + 59814 0.66 0.994847
Target:  5'- --gGCGCuGGACcGCGUGCUgcUCAUg -3'
miRNA:   3'- uagCGCGuCUUGuUGCACGAguAGUG- -5'
14151 3' -51.7 NC_003521.1 + 75904 0.66 0.994847
Target:  5'- uGUCgGCGUGGAugGGCacguuGUGCUCGcgCACg -3'
miRNA:   3'- -UAG-CGCGUCUugUUG-----CACGAGUa-GUG- -5'
14151 3' -51.7 NC_003521.1 + 134253 0.66 0.994847
Target:  5'- gAUCGacuCGCAGAu---CGUGCUC-UCGCg -3'
miRNA:   3'- -UAGC---GCGUCUuguuGCACGAGuAGUG- -5'
14151 3' -51.7 NC_003521.1 + 107668 0.66 0.994847
Target:  5'- --gGaCGCGGAACAuauuACG-GCUCAUgGCg -3'
miRNA:   3'- uagC-GCGUCUUGU----UGCaCGAGUAgUG- -5'
14151 3' -51.7 NC_003521.1 + 62565 0.66 0.994847
Target:  5'- -gCGCGCGGAAUcaugcugcgagAugGUGaaCAUCGCc -3'
miRNA:   3'- uaGCGCGUCUUG-----------UugCACgaGUAGUG- -5'
14151 3' -51.7 NC_003521.1 + 191380 0.66 0.994033
Target:  5'- -gCGCGCAG-ACGGCGUggaggaccagGCUCAUgGg -3'
miRNA:   3'- uaGCGCGUCuUGUUGCA----------CGAGUAgUg -5'
14151 3' -51.7 NC_003521.1 + 88055 0.66 0.994033
Target:  5'- --gGCGCAGGagGCGACGccGUUCcgCGCg -3'
miRNA:   3'- uagCGCGUCU--UGUUGCa-CGAGuaGUG- -5'
14151 3' -51.7 NC_003521.1 + 38290 0.66 0.994033
Target:  5'- -gCGCGCAGcAGguGCGagaGCUCGUCGg -3'
miRNA:   3'- uaGCGCGUC-UUguUGCa--CGAGUAGUg -5'
14151 3' -51.7 NC_003521.1 + 33278 0.66 0.994033
Target:  5'- gAUCGUGCAGcAGCuGCGagaGCUCGUaCAUg -3'
miRNA:   3'- -UAGCGCGUC-UUGuUGCa--CGAGUA-GUG- -5'
14151 3' -51.7 NC_003521.1 + 113201 0.66 0.994033
Target:  5'- uUCGUGCAcGAGCAGCaGUaccugcGCUCGggccUCACg -3'
miRNA:   3'- uAGCGCGU-CUUGUUG-CA------CGAGU----AGUG- -5'
14151 3' -51.7 NC_003521.1 + 96779 0.66 0.994033
Target:  5'- cGUCGCcgccgGCAGcAGCGGCGgcGCUCGggCACg -3'
miRNA:   3'- -UAGCG-----CGUC-UUGUUGCa-CGAGUa-GUG- -5'
14151 3' -51.7 NC_003521.1 + 186828 0.66 0.993946
Target:  5'- cUCGCGCAacaagauGGGCAACGUcgaGCgcgAUCACg -3'
miRNA:   3'- uAGCGCGU-------CUUGUUGCA---CGag-UAGUG- -5'
14151 3' -51.7 NC_003521.1 + 28911 0.66 0.993118
Target:  5'- -cUGCGCGacuACAACGUGCUCuUCu- -3'
miRNA:   3'- uaGCGCGUcu-UGUUGCACGAGuAGug -5'
14151 3' -51.7 NC_003521.1 + 54306 0.66 0.993118
Target:  5'- -cCaCGUAGAGCAGCGcgucgUGCUcCGUCACc -3'
miRNA:   3'- uaGcGCGUCUUGUUGC-----ACGA-GUAGUG- -5'
14151 3' -51.7 NC_003521.1 + 114951 0.66 0.993118
Target:  5'- cUCGCGCAGcGGCGGC-UGCUgcggCGUCAg -3'
miRNA:   3'- uAGCGCGUC-UUGUUGcACGA----GUAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.