miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14151 5' -55.8 NC_003521.1 + 5918 0.66 0.972662
Target:  5'- aCCGCGAGGggcuacgaugacGGUUcCGACGaaacaUCCaGCGUc -3'
miRNA:   3'- -GGCGCUCC------------UCAA-GCUGU-----AGGaCGCGa -5'
14151 5' -55.8 NC_003521.1 + 211583 0.66 0.972662
Target:  5'- cUCGCGGcGGuGUccccggaGACGUCCUGCaGCg -3'
miRNA:   3'- -GGCGCU-CCuCAag-----CUGUAGGACG-CGa -5'
14151 5' -55.8 NC_003521.1 + 111118 0.66 0.972662
Target:  5'- gCCGCGgccggcagaagcGGGcGUccucgcccgUCGACAgcUCCUGCGUg -3'
miRNA:   3'- -GGCGC------------UCCuCA---------AGCUGU--AGGACGCGa -5'
14151 5' -55.8 NC_003521.1 + 156670 0.66 0.96993
Target:  5'- aCgGgGAGGAcGUggaGACAUCUUcGCGCUc -3'
miRNA:   3'- -GgCgCUCCU-CAag-CUGUAGGA-CGCGA- -5'
14151 5' -55.8 NC_003521.1 + 54454 0.66 0.96993
Target:  5'- gCCGaCGGGGcgauGGUuaUCGACG-CCUGcCGCa -3'
miRNA:   3'- -GGC-GCUCC----UCA--AGCUGUaGGAC-GCGa -5'
14151 5' -55.8 NC_003521.1 + 181874 0.66 0.967309
Target:  5'- uUCGCGccagagggccugguGGAGUUCGaggcGCAgcccggaucgcucaUCCUGCGCa -3'
miRNA:   3'- -GGCGCu-------------CCUCAAGC----UGU--------------AGGACGCGa -5'
14151 5' -55.8 NC_003521.1 + 131462 0.66 0.967008
Target:  5'- gCCGCGcucucGGccucgUCGGCcUCCUGCGCc -3'
miRNA:   3'- -GGCGCu----CCuca--AGCUGuAGGACGCGa -5'
14151 5' -55.8 NC_003521.1 + 64674 0.66 0.967008
Target:  5'- aCCGggcucCGAGGAGaUgGAgAaCCUGCGCg -3'
miRNA:   3'- -GGC-----GCUCCUCaAgCUgUaGGACGCGa -5'
14151 5' -55.8 NC_003521.1 + 59569 0.66 0.963891
Target:  5'- gCCGCG-GGGGUUU--CGUCCgagaaGCGCg -3'
miRNA:   3'- -GGCGCuCCUCAAGcuGUAGGa----CGCGa -5'
14151 5' -55.8 NC_003521.1 + 164824 0.66 0.963891
Target:  5'- cCCGCgGGGGAGgaggaacCGGCggCCgGCGCc -3'
miRNA:   3'- -GGCG-CUCCUCaa-----GCUGuaGGaCGCGa -5'
14151 5' -55.8 NC_003521.1 + 144190 0.66 0.963891
Target:  5'- gCCGCGcgcuGGAGaaCGGCAagCUGCaGCa -3'
miRNA:   3'- -GGCGCu---CCUCaaGCUGUagGACG-CGa -5'
14151 5' -55.8 NC_003521.1 + 62422 0.66 0.963891
Target:  5'- aCCaGUGucuGGGcaucUUCGACuUCCUGCGCUa -3'
miRNA:   3'- -GG-CGCu--CCUc---AAGCUGuAGGACGCGA- -5'
14151 5' -55.8 NC_003521.1 + 11787 0.66 0.963891
Target:  5'- gCUGCGAGGAGUcccUCGAgccCCUagggGUGCUg -3'
miRNA:   3'- -GGCGCUCCUCA---AGCUguaGGA----CGCGA- -5'
14151 5' -55.8 NC_003521.1 + 183410 0.66 0.963891
Target:  5'- uCCGCGAGacGGUgggCGACcgCacgGCGCUg -3'
miRNA:   3'- -GGCGCUCc-UCAa--GCUGuaGga-CGCGA- -5'
14151 5' -55.8 NC_003521.1 + 148711 0.66 0.960574
Target:  5'- aCCGCacccGGGGGUUCcgacccggGGCAccgcCCUGCGCa -3'
miRNA:   3'- -GGCGc---UCCUCAAG--------CUGUa---GGACGCGa -5'
14151 5' -55.8 NC_003521.1 + 125523 0.66 0.960574
Target:  5'- gUGCuGAGGA--UCGGCAgcgcuUCCUGCGUc -3'
miRNA:   3'- gGCG-CUCCUcaAGCUGU-----AGGACGCGa -5'
14151 5' -55.8 NC_003521.1 + 155298 0.66 0.960574
Target:  5'- aCGCcauGGGcUUCGGCGUCCUGgGUg -3'
miRNA:   3'- gGCGcu-CCUcAAGCUGUAGGACgCGa -5'
14151 5' -55.8 NC_003521.1 + 211461 0.67 0.957052
Target:  5'- aCCGCGGccGcGGGUUCGcacucCGUCCagUGCGCg -3'
miRNA:   3'- -GGCGCU--C-CUCAAGCu----GUAGG--ACGCGa -5'
14151 5' -55.8 NC_003521.1 + 155013 0.67 0.957052
Target:  5'- cCCGCGAGGAcuuucccgagcGUgaCGACGUCUUGUuCUu -3'
miRNA:   3'- -GGCGCUCCU-----------CAa-GCUGUAGGACGcGA- -5'
14151 5' -55.8 NC_003521.1 + 119450 0.67 0.953322
Target:  5'- cUCGCGAuGGAGgcgCGACAgugugaagCC-GCGCg -3'
miRNA:   3'- -GGCGCU-CCUCaa-GCUGUa-------GGaCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.