miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14164 3' -55.3 NC_003521.1 + 55922 0.66 0.981813
Target:  5'- gGCGGCAacgGGGGUGccaGCGggguaUGAGGCCUc -3'
miRNA:   3'- gUGCCGUg--UCUCAC---UGCa----GCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 77716 0.66 0.981813
Target:  5'- gGCGGCGguGGucGUGGCGcUGGcGCCCg -3'
miRNA:   3'- gUGCCGUguCU--CACUGCaGCUcUGGG- -5'
14164 3' -55.3 NC_003521.1 + 13906 0.66 0.981813
Target:  5'- -cCGGCGCGGAGggGGCcgcgGAGGCCg -3'
miRNA:   3'- guGCCGUGUCUCa-CUGcag-CUCUGGg -5'
14164 3' -55.3 NC_003521.1 + 17339 0.66 0.981813
Target:  5'- gACGGCGCAacgcgcuGGUGGCcaacgGcCGAGACUCg -3'
miRNA:   3'- gUGCCGUGUc------UCACUG-----CaGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 108945 0.66 0.981813
Target:  5'- gCGCGGCugucGGUGGCGUCuauGACCa -3'
miRNA:   3'- -GUGCCGugucUCACUGCAGcu-CUGGg -5'
14164 3' -55.3 NC_003521.1 + 164301 0.66 0.981813
Target:  5'- gACGGCGCAGGcccUGGUGUCGcgcGGuCCCg -3'
miRNA:   3'- gUGCCGUGUCUc--ACUGCAGC---UCuGGG- -5'
14164 3' -55.3 NC_003521.1 + 45556 0.66 0.981813
Target:  5'- gGCGGCGaauGGUGAgCGUgGAG-CCCu -3'
miRNA:   3'- gUGCCGUgucUCACU-GCAgCUCuGGG- -5'
14164 3' -55.3 NC_003521.1 + 168553 0.66 0.980612
Target:  5'- gGCGGCGCuGgcgggcugcggguaaGGUGGCGgcu-GACCCa -3'
miRNA:   3'- gUGCCGUGuC---------------UCACUGCagcuCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 238113 0.66 0.979779
Target:  5'- gACGGCGCucccgcacGAGUGGCGUUccgggGAGAUg- -3'
miRNA:   3'- gUGCCGUGu-------CUCACUGCAG-----CUCUGgg -5'
14164 3' -55.3 NC_003521.1 + 203328 0.66 0.979779
Target:  5'- -cUGGUACAGcGUGGCGaUGGGgguGCCCu -3'
miRNA:   3'- guGCCGUGUCuCACUGCaGCUC---UGGG- -5'
14164 3' -55.3 NC_003521.1 + 179873 0.66 0.979779
Target:  5'- uGCGGCACAGcuGGaUGAgCGUCauGAGACg- -3'
miRNA:   3'- gUGCCGUGUC--UC-ACU-GCAG--CUCUGgg -5'
14164 3' -55.3 NC_003521.1 + 10821 0.66 0.979566
Target:  5'- gACGGCugGGgcaucuacucucuGGUGAC--CGAGAgCCCg -3'
miRNA:   3'- gUGCCGugUC-------------UCACUGcaGCUCU-GGG- -5'
14164 3' -55.3 NC_003521.1 + 73242 0.66 0.979566
Target:  5'- aGCGGCaacagcaGCGGcGUGACGaCGAGcGCCg -3'
miRNA:   3'- gUGCCG-------UGUCuCACUGCaGCUC-UGGg -5'
14164 3' -55.3 NC_003521.1 + 132386 0.66 0.97758
Target:  5'- gACGGUgauGCAGAcaGACGgggCGGGGuCCCu -3'
miRNA:   3'- gUGCCG---UGUCUcaCUGCa--GCUCU-GGG- -5'
14164 3' -55.3 NC_003521.1 + 88476 0.66 0.97758
Target:  5'- -cCGGCccCAGAGcaGCGUCGgcgcGGGCCCg -3'
miRNA:   3'- guGCCGu-GUCUCacUGCAGC----UCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 99184 0.66 0.97758
Target:  5'- -gUGGCugAGGGUcACGUCGGugacGGCCg -3'
miRNA:   3'- guGCCGugUCUCAcUGCAGCU----CUGGg -5'
14164 3' -55.3 NC_003521.1 + 143140 0.66 0.97758
Target:  5'- gACGGCGagGGAGUgGGCGuccUCGAcGAUCCc -3'
miRNA:   3'- gUGCCGUg-UCUCA-CUGC---AGCU-CUGGG- -5'
14164 3' -55.3 NC_003521.1 + 85822 0.66 0.97758
Target:  5'- aACGGCuucCAGGGcuucgGucuGCGUCGGGgaGCCCa -3'
miRNA:   3'- gUGCCGu--GUCUCa----C---UGCAGCUC--UGGG- -5'
14164 3' -55.3 NC_003521.1 + 228582 0.66 0.977351
Target:  5'- -uCGGCAgCgAGAGUGAggucugcCGUCGA-ACCCg -3'
miRNA:   3'- guGCCGU-G-UCUCACU-------GCAGCUcUGGG- -5'
14164 3' -55.3 NC_003521.1 + 183661 0.66 0.977351
Target:  5'- uGCGGCACGccGAcgaccugccgcgcGUGGcCGaCGAGACCUa -3'
miRNA:   3'- gUGCCGUGU--CU-------------CACU-GCaGCUCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.