miRNA display CGI


Results 1 - 20 of 143 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14164 3' -55.3 NC_003521.1 + 239757 0.68 0.931432
Target:  5'- gCGCGGCG-AGAGcUGGCGcaggUCGGuGGCCCc -3'
miRNA:   3'- -GUGCCGUgUCUC-ACUGC----AGCU-CUGGG- -5'
14164 3' -55.3 NC_003521.1 + 239247 0.68 0.939489
Target:  5'- gCACGGCcgucagcagcgacgGCGGGuGUGGCGcCGAGGCg- -3'
miRNA:   3'- -GUGCCG--------------UGUCU-CACUGCaGCUCUGgg -5'
14164 3' -55.3 NC_003521.1 + 238113 0.66 0.979779
Target:  5'- gACGGCGCucccgcacGAGUGGCGUUccgggGAGAUg- -3'
miRNA:   3'- gUGCCGUGu-------CUCACUGCAG-----CUCUGgg -5'
14164 3' -55.3 NC_003521.1 + 236136 0.67 0.953322
Target:  5'- gACGGgACGGGGgggaccgcgcGACGUCGccggcgGGACCUa -3'
miRNA:   3'- gUGCCgUGUCUCa---------CUGCAGC------UCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 228582 0.66 0.977351
Target:  5'- -uCGGCAgCgAGAGUGAggucugcCGUCGA-ACCCg -3'
miRNA:   3'- guGCCGU-G-UCUCACU-------GCAGCUcUGGG- -5'
14164 3' -55.3 NC_003521.1 + 226598 0.68 0.945221
Target:  5'- uCACGGCGUAGcccAGcGGCGUCaGGGGCUCg -3'
miRNA:   3'- -GUGCCGUGUC---UCaCUGCAG-CUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 224747 0.66 0.96993
Target:  5'- gGCGGC-CAGc---GCGUCGGGGCuCCg -3'
miRNA:   3'- gUGCCGuGUCucacUGCAGCUCUG-GG- -5'
14164 3' -55.3 NC_003521.1 + 222493 0.68 0.931432
Target:  5'- cUACGaGC-CAGA-UGGC-UCGAGGCCCa -3'
miRNA:   3'- -GUGC-CGuGUCUcACUGcAGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 219065 0.68 0.926392
Target:  5'- cCACGGCGCccaGGUGcAUGagcagCGAGACCUg -3'
miRNA:   3'- -GUGCCGUGuc-UCAC-UGCa----GCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 218723 0.68 0.936249
Target:  5'- gGCGGCGgGcGAGaagcGGCGUCGGGAcgguccCCCa -3'
miRNA:   3'- gUGCCGUgU-CUCa---CUGCAGCUCU------GGG- -5'
14164 3' -55.3 NC_003521.1 + 218479 0.68 0.945221
Target:  5'- --gGGCGCAGuGgccccgGACGUCGGGAaaggcgaaCCa -3'
miRNA:   3'- gugCCGUGUCuCa-----CUGCAGCUCUg-------GG- -5'
14164 3' -55.3 NC_003521.1 + 218093 0.69 0.921131
Target:  5'- gGCGGCGCc-GGUGACGaUGAGggcguagaGCCCg -3'
miRNA:   3'- gUGCCGUGucUCACUGCaGCUC--------UGGG- -5'
14164 3' -55.3 NC_003521.1 + 216307 0.66 0.972662
Target:  5'- -uUGGCG-GGGGUGAUGUCGGGAaagaggCCg -3'
miRNA:   3'- guGCCGUgUCUCACUGCAGCUCUg-----GG- -5'
14164 3' -55.3 NC_003521.1 + 216123 0.67 0.967008
Target:  5'- gCGCGGCGCGGAGgccGCGgcaGAGGaaggCCa -3'
miRNA:   3'- -GUGCCGUGUCUCac-UGCag-CUCUg---GG- -5'
14164 3' -55.3 NC_003521.1 + 214021 0.76 0.570818
Target:  5'- gACGGCGCucAGGGUGGCGUU-AGACCg -3'
miRNA:   3'- gUGCCGUG--UCUCACUGCAGcUCUGGg -5'
14164 3' -55.3 NC_003521.1 + 207510 0.67 0.967008
Target:  5'- -gUGGUGcCAGcAGUGACGUgggUGAGACCa -3'
miRNA:   3'- guGCCGU-GUC-UCACUGCA---GCUCUGGg -5'
14164 3' -55.3 NC_003521.1 + 206517 0.71 0.833429
Target:  5'- cCGCGGUuuauaaacguAgAGAGUGACGccCGuGGCCCg -3'
miRNA:   3'- -GUGCCG----------UgUCUCACUGCa-GCuCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 204720 0.66 0.96993
Target:  5'- cCACGGCGgGGAggGUGGCGaggguggugaUgGAGGCgCCg -3'
miRNA:   3'- -GUGCCGUgUCU--CACUGC----------AgCUCUG-GG- -5'
14164 3' -55.3 NC_003521.1 + 203328 0.66 0.979779
Target:  5'- -cUGGUACAGcGUGGCGaUGGGgguGCCCu -3'
miRNA:   3'- guGCCGUGUCuCACUGCaGCUC---UGGG- -5'
14164 3' -55.3 NC_003521.1 + 201257 0.67 0.953322
Target:  5'- uCACGccGCGCAGccagauGGccGGCGUCGGGGCCa -3'
miRNA:   3'- -GUGC--CGUGUC------UCa-CUGCAGCUCUGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.