miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14172 5' -63.8 NC_003521.1 + 5140 0.66 0.648739
Target:  5'- gUCUCuuGCUgGCAUCuCUCGGCUGCu -3'
miRNA:   3'- aAGAGcgCGGaCGUGG-GGGCCGACGu -5'
14172 5' -63.8 NC_003521.1 + 18185 0.66 0.648739
Target:  5'- -gCUgCGCGCCUGCcgGCCCUucgaucacauguCGGCcGCGg -3'
miRNA:   3'- aaGA-GCGCGGACG--UGGGG------------GCCGaCGU- -5'
14172 5' -63.8 NC_003521.1 + 13934 0.66 0.639123
Target:  5'- -gCUgGcCGCCgugGUGCCCCCGcaGCUGCc -3'
miRNA:   3'- aaGAgC-GCGGa--CGUGGGGGC--CGACGu -5'
14172 5' -63.8 NC_003521.1 + 80044 0.66 0.639123
Target:  5'- ---cCGCGCCcGCguGCCgCCGGCgGCAc -3'
miRNA:   3'- aagaGCGCGGaCG--UGGgGGCCGaCGU- -5'
14172 5' -63.8 NC_003521.1 + 80380 0.66 0.639123
Target:  5'- cUCUgcCGUGCCgucGCGCCUUCGGCguucUGCGg -3'
miRNA:   3'- aAGA--GCGCGGa--CGUGGGGGCCG----ACGU- -5'
14172 5' -63.8 NC_003521.1 + 150185 0.66 0.639123
Target:  5'- -aCUUGCGCUacCGCUCCCGGCggGCc -3'
miRNA:   3'- aaGAGCGCGGacGUGGGGGCCGa-CGu -5'
14172 5' -63.8 NC_003521.1 + 103258 0.66 0.639123
Target:  5'- -gUUCGCGCgUGCACUgcugCUCGGCcgGCGc -3'
miRNA:   3'- aaGAGCGCGgACGUGG----GGGCCGa-CGU- -5'
14172 5' -63.8 NC_003521.1 + 41869 0.66 0.639123
Target:  5'- cUCUCGCGCCUGgugcccaACCUCCa-CUGCc -3'
miRNA:   3'- aAGAGCGCGGACg------UGGGGGccGACGu -5'
14172 5' -63.8 NC_003521.1 + 65718 0.66 0.629501
Target:  5'- ----gGCGCCgcgGCGgCCCUGGCcgGCAa -3'
miRNA:   3'- aagagCGCGGa--CGUgGGGGCCGa-CGU- -5'
14172 5' -63.8 NC_003521.1 + 176444 0.66 0.629501
Target:  5'- gUUCUgcagaCGCGCCcGCACCUCgGGCaUGUc -3'
miRNA:   3'- -AAGA-----GCGCGGaCGUGGGGgCCG-ACGu -5'
14172 5' -63.8 NC_003521.1 + 131475 0.66 0.619882
Target:  5'- -cCUCGUcgGCCUcCugCgCCGGCUGCu -3'
miRNA:   3'- aaGAGCG--CGGAcGugGgGGCCGACGu -5'
14172 5' -63.8 NC_003521.1 + 207568 0.66 0.619882
Target:  5'- --aUCGCGCCggccugcuggcgUGUGCCagcucaacgCCGGCUGCAa -3'
miRNA:   3'- aagAGCGCGG------------ACGUGGg--------GGCCGACGU- -5'
14172 5' -63.8 NC_003521.1 + 124179 0.66 0.619882
Target:  5'- ----aGCGCCugUGCGCCUgCCGGCUGgGg -3'
miRNA:   3'- aagagCGCGG--ACGUGGG-GGCCGACgU- -5'
14172 5' -63.8 NC_003521.1 + 127128 0.66 0.619882
Target:  5'- ---gCGCGUCgUGCACCUCCaGGCgGCGc -3'
miRNA:   3'- aagaGCGCGG-ACGUGGGGG-CCGaCGU- -5'
14172 5' -63.8 NC_003521.1 + 75026 0.66 0.619882
Target:  5'- gUCUCGCgcaucGCCUGCACCUCgugCGaGgaGCAc -3'
miRNA:   3'- aAGAGCG-----CGGACGUGGGG---GC-CgaCGU- -5'
14172 5' -63.8 NC_003521.1 + 213444 0.66 0.61027
Target:  5'- aUCccCGUgGCCUGgC-CCCCCGGCUGgAg -3'
miRNA:   3'- aAGa-GCG-CGGAC-GuGGGGGCCGACgU- -5'
14172 5' -63.8 NC_003521.1 + 198029 0.66 0.61027
Target:  5'- ----gGCGCgUGCAgCCgCCgGGCUGCAc -3'
miRNA:   3'- aagagCGCGgACGU-GG-GGgCCGACGU- -5'
14172 5' -63.8 NC_003521.1 + 70714 0.66 0.61027
Target:  5'- gUCg-GCGCCUGCGCCggauguaCCGGCacuucguccagcUGCAg -3'
miRNA:   3'- aAGagCGCGGACGUGGg------GGCCG------------ACGU- -5'
14172 5' -63.8 NC_003521.1 + 129398 0.66 0.600673
Target:  5'- -gCUUGCGCUUGC-CCgCCCGcUUGCAg -3'
miRNA:   3'- aaGAGCGCGGACGuGG-GGGCcGACGU- -5'
14172 5' -63.8 NC_003521.1 + 116419 0.66 0.600673
Target:  5'- aUCUCGCGgCUGuCGgCCCUGuuugucauGCUGCGa -3'
miRNA:   3'- aAGAGCGCgGAC-GUgGGGGC--------CGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.