miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14172 5' -63.8 NC_003521.1 + 163142 0.68 0.497654
Target:  5'- gUCuUCGCcaGCgUGC-CCCCCGGcCUGCu -3'
miRNA:   3'- aAG-AGCG--CGgACGuGGGGGCC-GACGu -5'
14172 5' -63.8 NC_003521.1 + 160736 0.7 0.403299
Target:  5'- --gUCGCGCCgucgGCACCCCCGaugaGCAg -3'
miRNA:   3'- aagAGCGCGGa---CGUGGGGGCcga-CGU- -5'
14172 5' -63.8 NC_003521.1 + 156615 0.7 0.419617
Target:  5'- cUCUCGCGCCUGgugcugcgcgaCGCCCUgGGCUu-- -3'
miRNA:   3'- aAGAGCGCGGAC-----------GUGGGGgCCGAcgu -5'
14172 5' -63.8 NC_003521.1 + 154486 0.67 0.553112
Target:  5'- -gCUCGCugcacgGCCU-CACCaCCCGGCUGaCGu -3'
miRNA:   3'- aaGAGCG------CGGAcGUGG-GGGCCGAC-GU- -5'
14172 5' -63.8 NC_003521.1 + 150185 0.66 0.639123
Target:  5'- -aCUUGCGCUacCGCUCCCGGCggGCc -3'
miRNA:   3'- aaGAGCGCGGacGUGGGGGCCGa-CGu -5'
14172 5' -63.8 NC_003521.1 + 148785 0.67 0.591097
Target:  5'- --gUCGCGCCgaGgAgCCgCGGCUGCGg -3'
miRNA:   3'- aagAGCGCGGa-CgUgGGgGCCGACGU- -5'
14172 5' -63.8 NC_003521.1 + 145646 0.67 0.562549
Target:  5'- gUUC-CGCGCCgagcgcgagGUGCCCUCGGCccGCGa -3'
miRNA:   3'- -AAGaGCGCGGa--------CGUGGGGGCCGa-CGU- -5'
14172 5' -63.8 NC_003521.1 + 145180 0.71 0.348731
Target:  5'- -aUUCGUGCCUGaACCCgccgugaCCGGCUGCu -3'
miRNA:   3'- aaGAGCGCGGACgUGGG-------GGCCGACGu -5'
14172 5' -63.8 NC_003521.1 + 143928 0.69 0.469985
Target:  5'- ---gCGCGCC-GCAUCCCCaacugcucgcaccGGCUGCGc -3'
miRNA:   3'- aagaGCGCGGaCGUGGGGG-------------CCGACGU- -5'
14172 5' -63.8 NC_003521.1 + 138467 0.7 0.419617
Target:  5'- cUUCUUcaagaGCGCCUGCcgccaCCCCGGCgucgGCGc -3'
miRNA:   3'- -AAGAG-----CGCGGACGug---GGGGCCGa---CGU- -5'
14172 5' -63.8 NC_003521.1 + 138448 0.68 0.479715
Target:  5'- gUCccCGCGCgUGCAUCgCCGGCgGCGc -3'
miRNA:   3'- aAGa-GCGCGgACGUGGgGGCCGaCGU- -5'
14172 5' -63.8 NC_003521.1 + 137683 0.69 0.427925
Target:  5'- ---aCGCGCCUGCugCCCCugGGCUc-- -3'
miRNA:   3'- aagaGCGCGGACGugGGGG--CCGAcgu -5'
14172 5' -63.8 NC_003521.1 + 135168 0.68 0.479715
Target:  5'- --aUCGUGCCgccCACCCCCGaGCUGg- -3'
miRNA:   3'- aagAGCGCGGac-GUGGGGGC-CGACgu -5'
14172 5' -63.8 NC_003521.1 + 132319 0.68 0.515888
Target:  5'- aUCUCcCGCgUGCGCCUgCGGgUGCu -3'
miRNA:   3'- aAGAGcGCGgACGUGGGgGCCgACGu -5'
14172 5' -63.8 NC_003521.1 + 131475 0.66 0.619882
Target:  5'- -cCUCGUcgGCCUcCugCgCCGGCUGCu -3'
miRNA:   3'- aaGAGCG--CGGAcGugGgGGCCGACGu -5'
14172 5' -63.8 NC_003521.1 + 129398 0.66 0.600673
Target:  5'- -gCUUGCGCUUGC-CCgCCCGcUUGCAg -3'
miRNA:   3'- aaGAGCGCGGACGuGG-GGGCcGACGU- -5'
14172 5' -63.8 NC_003521.1 + 127128 0.66 0.619882
Target:  5'- ---gCGCGUCgUGCACCUCCaGGCgGCGc -3'
miRNA:   3'- aagaGCGCGG-ACGUGGGGG-CCGaCGU- -5'
14172 5' -63.8 NC_003521.1 + 124179 0.66 0.619882
Target:  5'- ----aGCGCCugUGCGCCUgCCGGCUGgGg -3'
miRNA:   3'- aagagCGCGG--ACGUGGG-GGCCGACgU- -5'
14172 5' -63.8 NC_003521.1 + 120917 0.66 0.600673
Target:  5'- -gCUUGCGUUUGCggcuGCCCgCGGCgGCGg -3'
miRNA:   3'- aaGAGCGCGGACG----UGGGgGCCGaCGU- -5'
14172 5' -63.8 NC_003521.1 + 116419 0.66 0.600673
Target:  5'- aUCUCGCGgCUGuCGgCCCUGuuugucauGCUGCGa -3'
miRNA:   3'- aAGAGCGCgGAC-GUgGGGGC--------CGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.