miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14178 5' -56.4 NC_003521.1 + 153197 0.66 0.960574
Target:  5'- gCGAGgcCUGCGgCGGcacCUGCUGcCACa -3'
miRNA:   3'- -GCUCauGGCGCgGCUu--GACGAC-GUGc -5'
14178 5' -56.4 NC_003521.1 + 162568 0.66 0.960574
Target:  5'- uCGAGUACCucuacaaGCUGGACgUGCaGCGCu -3'
miRNA:   3'- -GCUCAUGGcg-----CGGCUUG-ACGaCGUGc -5'
14178 5' -56.4 NC_003521.1 + 26148 0.66 0.960574
Target:  5'- -uGGUcuuCCGCGUcuaCGGACUGCUGCuGCu -3'
miRNA:   3'- gcUCAu--GGCGCG---GCUUGACGACG-UGc -5'
14178 5' -56.4 NC_003521.1 + 87016 0.66 0.960574
Target:  5'- aCGGG---CGUGCUGGGCacGCUGCGCGa -3'
miRNA:   3'- -GCUCaugGCGCGGCUUGa-CGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 170074 0.66 0.960574
Target:  5'- uGAucgGCCGCGgCGcGCUGCaGCugGa -3'
miRNA:   3'- gCUca-UGGCGCgGCuUGACGaCGugC- -5'
14178 5' -56.4 NC_003521.1 + 168501 0.66 0.960231
Target:  5'- uCGAGccgauguUACCGCGCguuuaCGAucuGCUGCUGCccuCGc -3'
miRNA:   3'- -GCUC-------AUGGCGCG-----GCU---UGACGACGu--GC- -5'
14178 5' -56.4 NC_003521.1 + 100804 0.66 0.960231
Target:  5'- aGGGUcgccuggGCUGCGaCUGuGAUUGUUGCGCGg -3'
miRNA:   3'- gCUCA-------UGGCGC-GGC-UUGACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 123955 0.66 0.957052
Target:  5'- ----aGCCGCGCC--ACUGC-GCGCGc -3'
miRNA:   3'- gcucaUGGCGCGGcuUGACGaCGUGC- -5'
14178 5' -56.4 NC_003521.1 + 123678 0.66 0.957052
Target:  5'- aCGAuGgccauCUGCGCC-AGCUGCUGguCGa -3'
miRNA:   3'- -GCU-Cau---GGCGCGGcUUGACGACguGC- -5'
14178 5' -56.4 NC_003521.1 + 162625 0.66 0.957052
Target:  5'- aCGAGcGCCGCGCCc-GCU-CcGCACGc -3'
miRNA:   3'- -GCUCaUGGCGCGGcuUGAcGaCGUGC- -5'
14178 5' -56.4 NC_003521.1 + 143919 0.66 0.956689
Target:  5'- aCGGGcACggCGCGCCGcauccccAACUGCUcGCACc -3'
miRNA:   3'- -GCUCaUG--GCGCGGC-------UUGACGA-CGUGc -5'
14178 5' -56.4 NC_003521.1 + 166637 0.66 0.953322
Target:  5'- uCGGGccgCGCGCCGGGCgccGCgGCGCa -3'
miRNA:   3'- -GCUCaugGCGCGGCUUGa--CGaCGUGc -5'
14178 5' -56.4 NC_003521.1 + 98796 0.66 0.953322
Target:  5'- aGAGU-CCGCGCgccguccacguCGAggcguugcaGCUGCUugGCGCGg -3'
miRNA:   3'- gCUCAuGGCGCG-----------GCU---------UGACGA--CGUGC- -5'
14178 5' -56.4 NC_003521.1 + 226185 0.66 0.953322
Target:  5'- aGGGccagaCGCaCUGcAGCUGCUGCACGg -3'
miRNA:   3'- gCUCaug--GCGcGGC-UUGACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 29463 0.66 0.953322
Target:  5'- uGAu--CCGCGaCCG-GCUGCUGCGgGa -3'
miRNA:   3'- gCUcauGGCGC-GGCuUGACGACGUgC- -5'
14178 5' -56.4 NC_003521.1 + 196992 0.66 0.952161
Target:  5'- aCGGGc-CCGCgGCCGGcggcggcugacccgGCUGCUGCgACa -3'
miRNA:   3'- -GCUCauGGCG-CGGCU--------------UGACGACG-UGc -5'
14178 5' -56.4 NC_003521.1 + 137244 0.66 0.949379
Target:  5'- gGAGUACgUGCGCa--GCUuCUGCGCGg -3'
miRNA:   3'- gCUCAUG-GCGCGgcuUGAcGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 170009 0.66 0.949379
Target:  5'- uGAGgccuUGCUGCGCCucuucGGGCcGCUGUGCGu -3'
miRNA:   3'- gCUC----AUGGCGCGG-----CUUGaCGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 16999 0.66 0.949379
Target:  5'- -cAGUAUCGacaGCagGAGCUGCUGCAa- -3'
miRNA:   3'- gcUCAUGGCg--CGg-CUUGACGACGUgc -5'
14178 5' -56.4 NC_003521.1 + 120844 0.66 0.948973
Target:  5'- uCGGGUGCCaUGCUGGACUcggccuugaggcgGCcGCGCGu -3'
miRNA:   3'- -GCUCAUGGcGCGGCUUGA-------------CGaCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.