miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14178 5' -56.4 NC_003521.1 + 235287 0.72 0.685774
Target:  5'- gCGGcgGCCGCGCCGGcugccgucaccgucGCUGCUGCuACu -3'
miRNA:   3'- -GCUcaUGGCGCGGCU--------------UGACGACG-UGc -5'
14178 5' -56.4 NC_003521.1 + 228070 0.68 0.90159
Target:  5'- gCGGGUcCCagcucacguccgagGCGCCGGaaaccucguccagGCUGUUGCGCGc -3'
miRNA:   3'- -GCUCAuGG--------------CGCGGCU-------------UGACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 226185 0.66 0.953322
Target:  5'- aGGGccagaCGCaCUGcAGCUGCUGCACGg -3'
miRNA:   3'- gCUCaug--GCGcGGC-UUGACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 225472 0.68 0.904021
Target:  5'- cCGAGUACgucaccaGUCGcGACUGCUGCACc -3'
miRNA:   3'- -GCUCAUGgcg----CGGC-UUGACGACGUGc -5'
14178 5' -56.4 NC_003521.1 + 217395 0.66 0.945221
Target:  5'- uGGGcACCGCcagGCUGAGCgGCgGCAUGa -3'
miRNA:   3'- gCUCaUGGCG---CGGCUUGaCGaCGUGC- -5'
14178 5' -56.4 NC_003521.1 + 212509 0.67 0.921131
Target:  5'- cCGcAG-GCCGCGCCGGGgUcGCUGC-CGc -3'
miRNA:   3'- -GC-UCaUGGCGCGGCUUgA-CGACGuGC- -5'
14178 5' -56.4 NC_003521.1 + 210568 0.71 0.749803
Target:  5'- aGGGUcagcuggccacggcaACCGCGCgGAcCUGCaGCGCGa -3'
miRNA:   3'- gCUCA---------------UGGCGCGgCUuGACGaCGUGC- -5'
14178 5' -56.4 NC_003521.1 + 210484 0.68 0.906416
Target:  5'- -uGGUGCgCGcCGCCGAcucgcuggcgcaguuGCUGgaGCGCGg -3'
miRNA:   3'- gcUCAUG-GC-GCGGCU---------------UGACgaCGUGC- -5'
14178 5' -56.4 NC_003521.1 + 208410 0.68 0.878183
Target:  5'- gGAG-GCCGUGCgccaCGGGCUGCUgugucGCACGc -3'
miRNA:   3'- gCUCaUGGCGCG----GCUUGACGA-----CGUGC- -5'
14178 5' -56.4 NC_003521.1 + 207323 0.68 0.89788
Target:  5'- uGAGUG-CGUGCCGGACgcucGCgugGCGCc -3'
miRNA:   3'- gCUCAUgGCGCGGCUUGa---CGa--CGUGc -5'
14178 5' -56.4 NC_003521.1 + 206115 0.7 0.825338
Target:  5'- gGAG-GCCG-GUC-AGCUGCUGCGCGa -3'
miRNA:   3'- gCUCaUGGCgCGGcUUGACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 205898 0.77 0.45834
Target:  5'- aCGAGgguCUGCGCCGcuacCUGCUGCGCu -3'
miRNA:   3'- -GCUCau-GGCGCGGCuu--GACGACGUGc -5'
14178 5' -56.4 NC_003521.1 + 202302 0.67 0.936249
Target:  5'- uCGAGcuCCGCcggcCCGAcuuCUGCUGCugGa -3'
miRNA:   3'- -GCUCauGGCGc---GGCUu--GACGACGugC- -5'
14178 5' -56.4 NC_003521.1 + 198622 0.67 0.919509
Target:  5'- gCGAcaGCCGCuggcccagggaaacGCCGuGCUGuCUGCACGu -3'
miRNA:   3'- -GCUcaUGGCG--------------CGGCuUGAC-GACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 196992 0.66 0.952161
Target:  5'- aCGGGc-CCGCgGCCGGcggcggcugacccgGCUGCUGCgACa -3'
miRNA:   3'- -GCUCauGGCG-CGGCU--------------UGACGACG-UGc -5'
14178 5' -56.4 NC_003521.1 + 196657 0.77 0.43205
Target:  5'- gGAGUACCgacgGCGCC-AGCUGCUGCuCGa -3'
miRNA:   3'- gCUCAUGG----CGCGGcUUGACGACGuGC- -5'
14178 5' -56.4 NC_003521.1 + 195392 0.71 0.755363
Target:  5'- gCGAGgccaugACCGCGCCGA-CgGCggGCACc -3'
miRNA:   3'- -GCUCa-----UGGCGCGGCUuGaCGa-CGUGc -5'
14178 5' -56.4 NC_003521.1 + 193381 0.74 0.619874
Target:  5'- gGAGUGCgGCGCCcGGCUGCaUGUGCc -3'
miRNA:   3'- gCUCAUGgCGCGGcUUGACG-ACGUGc -5'
14178 5' -56.4 NC_003521.1 + 190332 0.67 0.940845
Target:  5'- ----cACCGcCGCCGAcacGCUGUgGCACGc -3'
miRNA:   3'- gcucaUGGC-GCGGCU---UGACGaCGUGC- -5'
14178 5' -56.4 NC_003521.1 + 187454 0.67 0.940845
Target:  5'- -uGGUgcGCCGCGUCagcgGGACggUGCUGCACa -3'
miRNA:   3'- gcUCA--UGGCGCGG----CUUG--ACGACGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.