miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14178 5' -56.4 NC_003521.1 + 88679 1.1 0.004172
Target:  5'- gCGAGUACCGCGCCGAACUGCUGCACGg -3'
miRNA:   3'- -GCUCAUGGCGCGGCUUGACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 86256 0.71 0.736698
Target:  5'- uGAGaAUCGCGCUGAGgUuCUGCGCGg -3'
miRNA:   3'- gCUCaUGGCGCGGCUUgAcGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 210568 0.71 0.749803
Target:  5'- aGGGUcagcuggccacggcaACCGCGCgGAcCUGCaGCGCGa -3'
miRNA:   3'- gCUCA---------------UGGCGCGgCUuGACGaCGUGC- -5'
14178 5' -56.4 NC_003521.1 + 87016 0.66 0.960574
Target:  5'- aCGGG---CGUGCUGGGCacGCUGCGCGa -3'
miRNA:   3'- -GCUCaugGCGCGGCUUGa-CGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 185209 0.76 0.494671
Target:  5'- gGuGUggGCCGCGCgGGACUGCgUGUACGa -3'
miRNA:   3'- gCuCA--UGGCGCGgCUUGACG-ACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 90840 0.74 0.619874
Target:  5'- gCGGGUG-CGCGCCGcccguGCUGCUGCugaccACGg -3'
miRNA:   3'- -GCUCAUgGCGCGGCu----UGACGACG-----UGC- -5'
14178 5' -56.4 NC_003521.1 + 31393 0.73 0.669137
Target:  5'- -uGGUGCUuCGCCGuACUGCUGUGCGu -3'
miRNA:   3'- gcUCAUGGcGCGGCuUGACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 185104 0.73 0.678936
Target:  5'- gGAGgcgcugCGCGCCGAcauGCUGgaGCACGg -3'
miRNA:   3'- gCUCaug---GCGCGGCU---UGACgaCGUGC- -5'
14178 5' -56.4 NC_003521.1 + 183538 0.72 0.688699
Target:  5'- -cAGUcGCCGCGCacCGAcCUGCUGCugGg -3'
miRNA:   3'- gcUCA-UGGCGCG--GCUuGACGACGugC- -5'
14178 5' -56.4 NC_003521.1 + 144028 0.71 0.736698
Target:  5'- gCGAucGUGCCcguaGCGCCGccGCUGCUGCcgGCGg -3'
miRNA:   3'- -GCU--CAUGG----CGCGGCu-UGACGACG--UGC- -5'
14178 5' -56.4 NC_003521.1 + 29417 0.72 0.717694
Target:  5'- aCGAug--UGCGCCG-GCUGCUGCACGa -3'
miRNA:   3'- -GCUcaugGCGCGGCuUGACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 22436 0.72 0.688699
Target:  5'- cCGAGUACCGC-CCGcGCUucacGCgGCACGc -3'
miRNA:   3'- -GCUCAUGGCGcGGCuUGA----CGaCGUGC- -5'
14178 5' -56.4 NC_003521.1 + 26983 0.81 0.288137
Target:  5'- gCGAG-ACUGgGCCGAACUGCUGCGa- -3'
miRNA:   3'- -GCUCaUGGCgCGGCUUGACGACGUgc -5'
14178 5' -56.4 NC_003521.1 + 177739 0.72 0.727234
Target:  5'- gCGGGcAgCGCGCCGGcGCaGCUGUACGg -3'
miRNA:   3'- -GCUCaUgGCGCGGCU-UGaCGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 161707 0.78 0.38223
Target:  5'- gCGAGUACgGCGacaCCGAGCgGUUGCGCGa -3'
miRNA:   3'- -GCUCAUGgCGC---GGCUUGaCGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 235287 0.72 0.685774
Target:  5'- gCGGcgGCCGCGCCGGcugccgucaccgucGCUGCUGCuACu -3'
miRNA:   3'- -GCUcaUGGCGCGGCU--------------UGACGACG-UGc -5'
14178 5' -56.4 NC_003521.1 + 102249 0.71 0.736698
Target:  5'- gCGAGaUGCCGCGacaCGAcauGCUGCUG-ACGa -3'
miRNA:   3'- -GCUC-AUGGCGCg--GCU---UGACGACgUGC- -5'
14178 5' -56.4 NC_003521.1 + 163727 0.71 0.736698
Target:  5'- gCGAGUGCCgcgaccccauGCGCCGca-UGCUGCuCGa -3'
miRNA:   3'- -GCUCAUGG----------CGCGGCuugACGACGuGC- -5'
14178 5' -56.4 NC_003521.1 + 205898 0.77 0.45834
Target:  5'- aCGAGgguCUGCGCCGcuacCUGCUGCGCu -3'
miRNA:   3'- -GCUCau-GGCGCGGCuu--GACGACGUGc -5'
14178 5' -56.4 NC_003521.1 + 193381 0.74 0.619874
Target:  5'- gGAGUGCgGCGCCcGGCUGCaUGUGCc -3'
miRNA:   3'- gCUCAUGgCGCGGcUUGACG-ACGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.