miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14179 3' -51.9 NC_003521.1 + 211224 0.66 0.996141
Target:  5'- uGAAGGUCUugGUCAGCagGCUGuugggaauACACa -3'
miRNA:   3'- uCUUCUAGA--CGGUCGa-CGACu-------UGUGc -5'
14179 3' -51.9 NC_003521.1 + 15421 0.66 0.996141
Target:  5'- --cAGAUUUgaGCCGGgUGCgagGGACGCGg -3'
miRNA:   3'- ucuUCUAGA--CGGUCgACGa--CUUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 213769 0.66 0.995498
Target:  5'- uAGAAGAUg-GCCAGC-GCguaGACGCGc -3'
miRNA:   3'- -UCUUCUAgaCGGUCGaCGac-UUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 84358 0.66 0.995072
Target:  5'- aAGGAGccgGUCUGCgAGCUGaucugacaguugggcUUGAGCACc -3'
miRNA:   3'- -UCUUC---UAGACGgUCGAC---------------GACUUGUGc -5'
14179 3' -51.9 NC_003521.1 + 155391 0.66 0.99477
Target:  5'- cGGAcGA-CgagGCCGGCgggggGCUGGGCACc -3'
miRNA:   3'- -UCUuCUaGa--CGGUCGa----CGACUUGUGc -5'
14179 3' -51.9 NC_003521.1 + 64010 0.66 0.99477
Target:  5'- uAGAGGAgCUGCaGGC-GCUGgAGCGCa -3'
miRNA:   3'- -UCUUCUaGACGgUCGaCGAC-UUGUGc -5'
14179 3' -51.9 NC_003521.1 + 27214 0.66 0.99477
Target:  5'- aGGAAGGcgauggucuucuUCUGCUGGUcggGCgaGAGCACGg -3'
miRNA:   3'- -UCUUCU------------AGACGGUCGa--CGa-CUUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 18728 0.66 0.99395
Target:  5'- -cGAGAcgCUGCCGGC-GCUGcAGgGCGg -3'
miRNA:   3'- ucUUCUa-GACGGUCGaCGAC-UUgUGC- -5'
14179 3' -51.9 NC_003521.1 + 138380 0.66 0.99395
Target:  5'- -cGAGAUCUGCCgcGGCcUGCg--GCGCGu -3'
miRNA:   3'- ucUUCUAGACGG--UCG-ACGacuUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 198742 0.66 0.993029
Target:  5'- cAGAcgAGGUCuUGCCGuGCUcGCUGGuCGCGc -3'
miRNA:   3'- -UCU--UCUAG-ACGGU-CGA-CGACUuGUGC- -5'
14179 3' -51.9 NC_003521.1 + 119235 0.66 0.993029
Target:  5'- cAGcuGGUgUGCUcGCUGgaGAACACGc -3'
miRNA:   3'- -UCuuCUAgACGGuCGACgaCUUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 40802 0.66 0.993029
Target:  5'- -cAGGcUCUGCCAGC-GUUGAGuCACa -3'
miRNA:   3'- ucUUCuAGACGGUCGaCGACUU-GUGc -5'
14179 3' -51.9 NC_003521.1 + 480 0.66 0.993029
Target:  5'- -cAGGcUCUGCCAGC-GUUGAGuCACa -3'
miRNA:   3'- ucUUCuAGACGGUCGaCGACUU-GUGc -5'
14179 3' -51.9 NC_003521.1 + 56771 0.67 0.992
Target:  5'- cAGAAcg-CcGuCCAGCUGCUGuGCGCGa -3'
miRNA:   3'- -UCUUcuaGaC-GGUCGACGACuUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 161888 0.67 0.992
Target:  5'- cAGaAAGAUCgGCgAGUaccUGCUGgAGCGCGg -3'
miRNA:   3'- -UC-UUCUAGaCGgUCG---ACGAC-UUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 101461 0.67 0.992
Target:  5'- cGgcGcUCUucGCCAGCUGCUacAACACGa -3'
miRNA:   3'- uCuuCuAGA--CGGUCGACGAc-UUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 80350 0.67 0.990854
Target:  5'- gGGAAGAgCUGCUccagcGGCUGCaUGuACAUGc -3'
miRNA:   3'- -UCUUCUaGACGG-----UCGACG-ACuUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 144094 0.67 0.990854
Target:  5'- --uGGGcuUCUGCCucaugcGGCUGCUGGACcgccGCGg -3'
miRNA:   3'- ucuUCU--AGACGG------UCGACGACUUG----UGC- -5'
14179 3' -51.9 NC_003521.1 + 26164 0.67 0.990854
Target:  5'- --cGGA-CUGCU-GCUGCUGGAgACGg -3'
miRNA:   3'- ucuUCUaGACGGuCGACGACUUgUGC- -5'
14179 3' -51.9 NC_003521.1 + 86390 0.67 0.989582
Target:  5'- gGGAAGAaggGCCAGCggucgacGCgggGGACGCGc -3'
miRNA:   3'- -UCUUCUagaCGGUCGa------CGa--CUUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.