miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14179 5' -58.5 NC_003521.1 + 4244 0.66 0.905366
Target:  5'- gGCUGgcuGCCGUGAGauGGCacacgGCGAGCa -3'
miRNA:   3'- -CGGCac-UGGUACUCggCCG-----UGCUCGa -5'
14179 5' -58.5 NC_003521.1 + 112110 0.66 0.905366
Target:  5'- cGgCGUGAUgGUGAGCaCGGCcaACGugauGCa -3'
miRNA:   3'- -CgGCACUGgUACUCG-GCCG--UGCu---CGa -5'
14179 5' -58.5 NC_003521.1 + 92123 0.66 0.905366
Target:  5'- uGCCGU-ACCAgcUGAGgUGGCagcuggccccgACGAGCg -3'
miRNA:   3'- -CGGCAcUGGU--ACUCgGCCG-----------UGCUCGa -5'
14179 5' -58.5 NC_003521.1 + 121127 0.66 0.905366
Target:  5'- cGCUGU-ACUggGGGCCGcgcaGCAUGAGCa -3'
miRNA:   3'- -CGGCAcUGGuaCUCGGC----CGUGCUCGa -5'
14179 5' -58.5 NC_003521.1 + 59419 0.66 0.904772
Target:  5'- uUCGUGGCaCGcGAcagcggcgccgccGCCGGCAgCGAGCUc -3'
miRNA:   3'- cGGCACUG-GUaCU-------------CGGCCGU-GCUCGA- -5'
14179 5' -58.5 NC_003521.1 + 107462 0.66 0.90177
Target:  5'- uGCCGgcgGACCGUGcugaucuccacguCCGGCGCccaGAGCa -3'
miRNA:   3'- -CGGCa--CUGGUACuc-----------GGCCGUG---CUCGa -5'
14179 5' -58.5 NC_003521.1 + 200482 0.66 0.899329
Target:  5'- cGCCGUGAUCcUG-GCCaaacuggcGGCGCgcaccGAGCUg -3'
miRNA:   3'- -CGGCACUGGuACuCGG--------CCGUG-----CUCGA- -5'
14179 5' -58.5 NC_003521.1 + 211398 0.66 0.899329
Target:  5'- cGCCGgcucucGugCAgcAGCCGGCgcacaucgugaaACGAGCUc -3'
miRNA:   3'- -CGGCa-----CugGUacUCGGCCG------------UGCUCGA- -5'
14179 5' -58.5 NC_003521.1 + 192764 0.66 0.899329
Target:  5'- gGCCGU--CCAUcAGCucgaucuccacCGGCACGGGCUu -3'
miRNA:   3'- -CGGCAcuGGUAcUCG-----------GCCGUGCUCGA- -5'
14179 5' -58.5 NC_003521.1 + 105943 0.66 0.899329
Target:  5'- gGCCGgcgcggaugaUGACCGUGuGUCGGgUGCGcAGCg -3'
miRNA:   3'- -CGGC----------ACUGGUACuCGGCC-GUGC-UCGa -5'
14179 5' -58.5 NC_003521.1 + 103584 0.66 0.899329
Target:  5'- cGCCGUcGGCCccG-GCCGGUgcGCGGGg- -3'
miRNA:   3'- -CGGCA-CUGGuaCuCGGCCG--UGCUCga -5'
14179 5' -58.5 NC_003521.1 + 87263 0.66 0.899329
Target:  5'- gGCUGUGcGCCGUGcGCgUGGCcaACGGGCc -3'
miRNA:   3'- -CGGCAC-UGGUACuCG-GCCG--UGCUCGa -5'
14179 5' -58.5 NC_003521.1 + 221671 0.66 0.897477
Target:  5'- cGCCGUGcucucggucaccacGCCGUGGgucucguuGCCGaGCACGcAGUg -3'
miRNA:   3'- -CGGCAC--------------UGGUACU--------CGGC-CGUGC-UCGa -5'
14179 5' -58.5 NC_003521.1 + 148354 0.66 0.893082
Target:  5'- gGCUGggaGACCcccGAGCgGGCAagcCGAGCg -3'
miRNA:   3'- -CGGCa--CUGGua-CUCGgCCGU---GCUCGa -5'
14179 5' -58.5 NC_003521.1 + 207724 0.66 0.893082
Target:  5'- cGCCGU---CAUcGGCUGGCugGAGCc -3'
miRNA:   3'- -CGGCAcugGUAcUCGGCCGugCUCGa -5'
14179 5' -58.5 NC_003521.1 + 51119 0.66 0.893082
Target:  5'- aGCCGggagGGCUgguUGAGaCaGCACGAGCg -3'
miRNA:   3'- -CGGCa---CUGGu--ACUCgGcCGUGCUCGa -5'
14179 5' -58.5 NC_003521.1 + 186544 0.66 0.893082
Target:  5'- uCCGUGGgaGgcaGGGCCGGCACGAaCUu -3'
miRNA:   3'- cGGCACUggUa--CUCGGCCGUGCUcGA- -5'
14179 5' -58.5 NC_003521.1 + 148438 0.66 0.893082
Target:  5'- cGCCGgcGGCUccagggGUG-GCCGGUGCGuGCUg -3'
miRNA:   3'- -CGGCa-CUGG------UACuCGGCCGUGCuCGA- -5'
14179 5' -58.5 NC_003521.1 + 159821 0.66 0.893082
Target:  5'- -aCGgaccGGCCGUGAGgCgcugcgcggaGGCGCGAGCg -3'
miRNA:   3'- cgGCa---CUGGUACUCgG----------CCGUGCUCGa -5'
14179 5' -58.5 NC_003521.1 + 229123 0.66 0.893082
Target:  5'- gGCCG-GACgaggaAUGAGCCGGUgguGC-AGCUa -3'
miRNA:   3'- -CGGCaCUGg----UACUCGGCCG---UGcUCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.