miRNA display CGI


Results 1 - 20 of 134 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14179 5' -58.5 NC_003521.1 + 238503 0.68 0.785858
Target:  5'- aGCC----CCAggaGGCCGGCGCGAGCa -3'
miRNA:   3'- -CGGcacuGGUac-UCGGCCGUGCUCGa -5'
14179 5' -58.5 NC_003521.1 + 238204 0.66 0.879287
Target:  5'- aGUCGaGGCCAaGAGCCugggcgucggcacGGCGuCGAGCg -3'
miRNA:   3'- -CGGCaCUGGUaCUCGG-------------CCGU-GCUCGa -5'
14179 5' -58.5 NC_003521.1 + 235084 0.66 0.893082
Target:  5'- cGUCaUGACCAUGAcacgcGCCGuGCcCGGGCc -3'
miRNA:   3'- -CGGcACUGGUACU-----CGGC-CGuGCUCGa -5'
14179 5' -58.5 NC_003521.1 + 234663 0.68 0.827975
Target:  5'- aGCCaG-GAgCcgGAGCCGGCGCauuGGCUg -3'
miRNA:   3'- -CGG-CaCUgGuaCUCGGCCGUGc--UCGA- -5'
14179 5' -58.5 NC_003521.1 + 229123 0.66 0.893082
Target:  5'- gGCCG-GACgaggaAUGAGCCGGUgguGC-AGCUa -3'
miRNA:   3'- -CGGCaCUGg----UACUCGGCCG---UGcUCGA- -5'
14179 5' -58.5 NC_003521.1 + 223784 0.66 0.886626
Target:  5'- cGCCGUuaccGCCGUGGGCCGcCagacgACGGGCc -3'
miRNA:   3'- -CGGCAc---UGGUACUCGGCcG-----UGCUCGa -5'
14179 5' -58.5 NC_003521.1 + 221671 0.66 0.897477
Target:  5'- cGCCGUGcucucggucaccacGCCGUGGgucucguuGCCGaGCACGcAGUg -3'
miRNA:   3'- -CGGCAC--------------UGGUACU--------CGGC-CGUGC-UCGa -5'
14179 5' -58.5 NC_003521.1 + 219255 0.68 0.803136
Target:  5'- cGCCGgguagagcagGGCCcgcagGGGCUGGCACauGAGCg -3'
miRNA:   3'- -CGGCa---------CUGGua---CUCGGCCGUG--CUCGa -5'
14179 5' -58.5 NC_003521.1 + 218370 0.67 0.873102
Target:  5'- aCCGUGAgCCAggcGuGCCGcgugaaGCGCGGGCg -3'
miRNA:   3'- cGGCACU-GGUa--CuCGGC------CGUGCUCGa -5'
14179 5' -58.5 NC_003521.1 + 213447 0.72 0.605504
Target:  5'- cCCGUGGCC-UGGccccCCGGCugGAGCc -3'
miRNA:   3'- cGGCACUGGuACUc---GGCCGugCUCGa -5'
14179 5' -58.5 NC_003521.1 + 213025 0.71 0.654349
Target:  5'- cGCCG-GGC---GAGCCGGC-CGAGCg -3'
miRNA:   3'- -CGGCaCUGguaCUCGGCCGuGCUCGa -5'
14179 5' -58.5 NC_003521.1 + 212851 0.71 0.625035
Target:  5'- cGCCGUGGCCGUGAGCgCcGC-CuGGCg -3'
miRNA:   3'- -CGGCACUGGUACUCG-GcCGuGcUCGa -5'
14179 5' -58.5 NC_003521.1 + 212281 0.68 0.827975
Target:  5'- aCCaggcUGGCCAgggcgaaGGCCGGCAUGGGCa -3'
miRNA:   3'- cGGc---ACUGGUac-----UCGGCCGUGCUCGa -5'
14179 5' -58.5 NC_003521.1 + 212157 0.68 0.827975
Target:  5'- gGCCGUGuCCAUGuGCCGcGCcuugcccaGGGCc -3'
miRNA:   3'- -CGGCACuGGUACuCGGC-CGug------CUCGa -5'
14179 5' -58.5 NC_003521.1 + 212023 0.67 0.865327
Target:  5'- gGCCGUGuGCCAaguggcaUGAGagGGCGCgGGGCg -3'
miRNA:   3'- -CGGCAC-UGGU-------ACUCggCCGUG-CUCGa -5'
14179 5' -58.5 NC_003521.1 + 211398 0.66 0.899329
Target:  5'- cGCCGgcucucGugCAgcAGCCGGCgcacaucgugaaACGAGCUc -3'
miRNA:   3'- -CGGCa-----CugGUacUCGGCCG------------UGCUCGA- -5'
14179 5' -58.5 NC_003521.1 + 208751 0.73 0.509869
Target:  5'- gGCCGUGGCCAcGGGCCaGUACGuGGUc -3'
miRNA:   3'- -CGGCACUGGUaCUCGGcCGUGC-UCGa -5'
14179 5' -58.5 NC_003521.1 + 207724 0.66 0.893082
Target:  5'- cGCCGU---CAUcGGCUGGCugGAGCc -3'
miRNA:   3'- -CGGCAcugGUAcUCGGCCGugCUCGa -5'
14179 5' -58.5 NC_003521.1 + 204937 0.68 0.794564
Target:  5'- uGCCGUGGCacc-GGCCaGCGCGAGaCg -3'
miRNA:   3'- -CGGCACUGguacUCGGcCGUGCUC-Ga -5'
14179 5' -58.5 NC_003521.1 + 201732 0.67 0.866043
Target:  5'- cGCCaacccuggGUGAUCcUGGGCUccuGGCAgGAGCUg -3'
miRNA:   3'- -CGG--------CACUGGuACUCGG---CCGUgCUCGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.