miRNA display CGI


Results 1 - 20 of 134 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14179 5' -58.5 NC_003521.1 + 87513 1.09 0.002614
Target:  5'- gGCCGUGACCAUGAGCCGGCACGAGCUg -3'
miRNA:   3'- -CGGCACUGGUACUCGGCCGUGCUCGA- -5'
14179 5' -58.5 NC_003521.1 + 104039 0.7 0.673823
Target:  5'- -gCGUGACCGUGAGCCcGCuguCGcGCa -3'
miRNA:   3'- cgGCACUGGUACUCGGcCGu--GCuCGa -5'
14179 5' -58.5 NC_003521.1 + 195180 0.7 0.693173
Target:  5'- cGCCG-GACCccgcgGAGCCGGCgGCGguGGCc -3'
miRNA:   3'- -CGGCaCUGGua---CUCGGCCG-UGC--UCGa -5'
14179 5' -58.5 NC_003521.1 + 112110 0.66 0.905366
Target:  5'- cGgCGUGAUgGUGAGCaCGGCcaACGugauGCa -3'
miRNA:   3'- -CgGCACUGgUACUCG-GCCG--UGCu---CGa -5'
14179 5' -58.5 NC_003521.1 + 29918 0.74 0.455553
Target:  5'- cCCGUGGCCGUcaaGGGCCuGGCACG-GCc -3'
miRNA:   3'- cGGCACUGGUA---CUCGG-CCGUGCuCGa -5'
14179 5' -58.5 NC_003521.1 + 23095 0.74 0.49144
Target:  5'- uCCGUGGCCGggcgggGGGCCGGgACG-GCa -3'
miRNA:   3'- cGGCACUGGUa-----CUCGGCCgUGCuCGa -5'
14179 5' -58.5 NC_003521.1 + 151521 0.73 0.509869
Target:  5'- cGCCGUcGGCCA-GAGgCGGCGCGGacGCg -3'
miRNA:   3'- -CGGCA-CUGGUaCUCgGCCGUGCU--CGa -5'
14179 5' -58.5 NC_003521.1 + 104909 0.73 0.519192
Target:  5'- gGCCGUGGCCGa-GGCCGGCACaaagacggggGAGUc -3'
miRNA:   3'- -CGGCACUGGUacUCGGCCGUG----------CUCGa -5'
14179 5' -58.5 NC_003521.1 + 122688 0.72 0.57636
Target:  5'- cGCCgGUGAUCAUGGGCgucuCGGCG-GGGCUg -3'
miRNA:   3'- -CGG-CACUGGUACUCG----GCCGUgCUCGA- -5'
14179 5' -58.5 NC_003521.1 + 101114 0.71 0.653374
Target:  5'- aGCCGUGACCAaGAuccccguGCUGGCcaaucGCGuGCUg -3'
miRNA:   3'- -CGGCACUGGUaCU-------CGGCCG-----UGCuCGA- -5'
14179 5' -58.5 NC_003521.1 + 213447 0.72 0.605504
Target:  5'- cCCGUGGCC-UGGccccCCGGCugGAGCc -3'
miRNA:   3'- cGGCACUGGuACUc---GGCCGugCUCGa -5'
14179 5' -58.5 NC_003521.1 + 103675 0.72 0.56671
Target:  5'- gGCCGcGGCCAUG-GCgGGCGagucCGAGCg -3'
miRNA:   3'- -CGGCaCUGGUACuCGgCCGU----GCUCGa -5'
14179 5' -58.5 NC_003521.1 + 17353 0.78 0.307157
Target:  5'- cCCG-GGCCGUGAcGCCGGCGCG-GCg -3'
miRNA:   3'- cGGCaCUGGUACU-CGGCCGUGCuCGa -5'
14179 5' -58.5 NC_003521.1 + 212851 0.71 0.625035
Target:  5'- cGCCGUGGCCGUGAGCgCcGC-CuGGCg -3'
miRNA:   3'- -CGGCACUGGUACUCG-GcCGuGcUCGa -5'
14179 5' -58.5 NC_003521.1 + 130177 0.77 0.349741
Target:  5'- gGCCGUGACCGU--GCCGGCGCccGGCg -3'
miRNA:   3'- -CGGCACUGGUAcuCGGCCGUGc-UCGa -5'
14179 5' -58.5 NC_003521.1 + 193150 0.72 0.56094
Target:  5'- uGCCGUGucgucggcgcacagcAUCucagGAGCCGGCGgGAGCg -3'
miRNA:   3'- -CGGCAC---------------UGGua--CUCGGCCGUgCUCGa -5'
14179 5' -58.5 NC_003521.1 + 18074 0.71 0.633833
Target:  5'- cGCCGUGGCCGU-AGCCcagacGGCGCgcgagauGAGCg -3'
miRNA:   3'- -CGGCACUGGUAcUCGG-----CCGUG-------CUCGa -5'
14179 5' -58.5 NC_003521.1 + 23324 0.7 0.693173
Target:  5'- aCCGUGGCCAUGcaGGCCaccuGCACGuuccuGCUg -3'
miRNA:   3'- cGGCACUGGUAC--UCGGc---CGUGCu----CGA- -5'
14179 5' -58.5 NC_003521.1 + 53338 0.76 0.380383
Target:  5'- cGUCGUGACCAccacGCCGGCGCG-GCg -3'
miRNA:   3'- -CGGCACUGGUacu-CGGCCGUGCuCGa -5'
14179 5' -58.5 NC_003521.1 + 208751 0.73 0.509869
Target:  5'- gGCCGUGGCCAcGGGCCaGUACGuGGUc -3'
miRNA:   3'- -CGGCACUGGUaCUCGGcCGUGC-UCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.