miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14183 5' -55 NC_003521.1 + 653 0.65 0.975764
Target:  5'- cGGGCCccGGGgg-GACGcgGAGGAGGGg -3'
miRNA:   3'- cUCCGG--CUCaugCUGCuaCUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 40974 0.65 0.975764
Target:  5'- cGGGCCccGGGgg-GACGcgGAGGAGGGg -3'
miRNA:   3'- cUCCGG--CUCaugCUGCuaCUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 13115 0.65 0.974761
Target:  5'- aGAGGCCGAGaagacUACGGgaaaaaacaaaaaGGUcGAGGAGGAc -3'
miRNA:   3'- -CUCCGGCUC-----AUGCUg------------CUA-CUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 164901 0.66 0.9732
Target:  5'- --cGCCGuGaugacgACGACGAUGAGGAuGAc -3'
miRNA:   3'- cucCGGCuCa-----UGCUGCUACUCCU-CUu -5'
14183 5' -55 NC_003521.1 + 53161 0.66 0.9732
Target:  5'- --cGUCGGGgACGGCGgcGAGGAGGu -3'
miRNA:   3'- cucCGGCUCaUGCUGCuaCUCCUCUu -5'
14183 5' -55 NC_003521.1 + 156964 0.66 0.9732
Target:  5'- uGGGUCGAGgACGGag--GAGGAGGAg -3'
miRNA:   3'- cUCCGGCUCaUGCUgcuaCUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 189097 0.66 0.9732
Target:  5'- uGAGcaCCGAGUcgGACGAcGAGGAGAc -3'
miRNA:   3'- -CUCc-GGCUCAugCUGCUaCUCCUCUu -5'
14183 5' -55 NC_003521.1 + 224144 0.66 0.9732
Target:  5'- uGGGCCGAGU-CGGgccaGGUcAGGAGGAg -3'
miRNA:   3'- cUCCGGCUCAuGCUg---CUAcUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 91353 0.66 0.970447
Target:  5'- -uGGUCGGG-AgGACGGUGgGGGAGGGg -3'
miRNA:   3'- cuCCGGCUCaUgCUGCUAC-UCCUCUU- -5'
14183 5' -55 NC_003521.1 + 142272 0.66 0.967496
Target:  5'- --cGCCGGagACGACGAUGGcucGGAGGAa -3'
miRNA:   3'- cucCGGCUcaUGCUGCUACU---CCUCUU- -5'
14183 5' -55 NC_003521.1 + 195359 0.66 0.967496
Target:  5'- uGGGCCGGGUGaaggUGACGcccGAGGAcGAGg -3'
miRNA:   3'- cUCCGGCUCAU----GCUGCua-CUCCU-CUU- -5'
14183 5' -55 NC_003521.1 + 86700 0.66 0.967496
Target:  5'- cGGGCCGcGgcgGCGACGAcGAGGcGGu -3'
miRNA:   3'- cUCCGGCuCa--UGCUGCUaCUCCuCUu -5'
14183 5' -55 NC_003521.1 + 98823 0.66 0.967496
Target:  5'- -cGGCCGGGaucugaggugACGGCGAgGAGGuGAu -3'
miRNA:   3'- cuCCGGCUCa---------UGCUGCUaCUCCuCUu -5'
14183 5' -55 NC_003521.1 + 36302 0.66 0.965628
Target:  5'- cGAGGCCGGGUGgGGCGcAcccucagucggggcgUGGGGAc-- -3'
miRNA:   3'- -CUCCGGCUCAUgCUGC-U---------------ACUCCUcuu -5'
14183 5' -55 NC_003521.1 + 163977 0.66 0.964342
Target:  5'- cGAGGaCGAGgACGcGCGGgaaGAGGAGGAa -3'
miRNA:   3'- -CUCCgGCUCaUGC-UGCUa--CUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 13639 0.66 0.96098
Target:  5'- uGGGCUGGGaaggGCGGCGGaGgcGGGAGAAg -3'
miRNA:   3'- cUCCGGCUCa---UGCUGCUaC--UCCUCUU- -5'
14183 5' -55 NC_003521.1 + 172870 0.66 0.96098
Target:  5'- uGAGGCCGAGcUGCag----GAGGAGGAa -3'
miRNA:   3'- -CUCCGGCUC-AUGcugcuaCUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 4239 0.67 0.957406
Target:  5'- gGAGGaCCGAG-ACGGgGAgGAGGAcGAGa -3'
miRNA:   3'- -CUCC-GGCUCaUGCUgCUaCUCCU-CUU- -5'
14183 5' -55 NC_003521.1 + 221344 0.67 0.9496
Target:  5'- aAGGCUGccgcuuUGCGGCGGUaGAGGAGGGg -3'
miRNA:   3'- cUCCGGCuc----AUGCUGCUA-CUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 159648 0.67 0.948352
Target:  5'- cGAGGCCuGGUGCGugGAccaacggcgcacccUGAGGucuucaAGGAg -3'
miRNA:   3'- -CUCCGGcUCAUGCugCU--------------ACUCC------UCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.