miRNA display CGI


Results 21 - 40 of 357 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14195 3' -56.4 NC_003521.1 + 106933 0.73 0.585324
Target:  5'- aCGUUGCuGCugUAGCAccgauuGCAGCUGCUc -3'
miRNA:   3'- aGCGAUGcCGugGUCGU------UGUCGACGA- -5'
14195 3' -56.4 NC_003521.1 + 197263 0.74 0.545708
Target:  5'- gUGCUugacGCGGCGCCGGCGGCgGGgaGCg -3'
miRNA:   3'- aGCGA----UGCCGUGGUCGUUG-UCgaCGa -5'
14195 3' -56.4 NC_003521.1 + 76355 0.76 0.442321
Target:  5'- -gGCUGCGGCGgCGGCAGCGGCgaccGUg -3'
miRNA:   3'- agCGAUGCCGUgGUCGUUGUCGa---CGa -5'
14195 3' -56.4 NC_003521.1 + 170151 0.81 0.243458
Target:  5'- aCGCcguCGGUuuuCCAGCAGCAGCUGCa -3'
miRNA:   3'- aGCGau-GCCGu--GGUCGUUGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 14600 0.72 0.649605
Target:  5'- -gGCUACGGCACggugauuaugCGgcugaugaagaccguGCAGCAGCUGCa -3'
miRNA:   3'- agCGAUGCCGUG----------GU---------------CGUUGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 187321 0.73 0.605353
Target:  5'- cCGCUGCGaCGCC-GCAGCAGCgGCc -3'
miRNA:   3'- aGCGAUGCcGUGGuCGUUGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 75167 0.74 0.545708
Target:  5'- aCGC-AUGGUGCCAGCGcgGCGuGCUGCUg -3'
miRNA:   3'- aGCGaUGCCGUGGUCGU--UGU-CGACGA- -5'
14195 3' -56.4 NC_003521.1 + 179957 0.86 0.112615
Target:  5'- --aCUGCGGCACCAGCAcCAGCUGCg -3'
miRNA:   3'- agcGAUGCCGUGGUCGUuGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 123635 0.73 0.595325
Target:  5'- cCGCcucggGCGGCGgCAGCGACGGCggguuagGCUu -3'
miRNA:   3'- aGCGa----UGCCGUgGUCGUUGUCGa------CGA- -5'
14195 3' -56.4 NC_003521.1 + 1309 0.88 0.086647
Target:  5'- cCGCUACGGCGCCGGCGacguggcGCGGCUGUa -3'
miRNA:   3'- aGCGAUGCCGUGGUCGU-------UGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 190539 0.74 0.545708
Target:  5'- gUGCgGCGGCAgCAGCGGCggacccGGCUGCa -3'
miRNA:   3'- aGCGaUGCCGUgGUCGUUG------UCGACGa -5'
14195 3' -56.4 NC_003521.1 + 54206 0.73 0.592322
Target:  5'- cCGCUGCuGGCcggugguCCGGCAguaccgacugccggGCGGCUGCUa -3'
miRNA:   3'- aGCGAUG-CCGu------GGUCGU--------------UGUCGACGA- -5'
14195 3' -56.4 NC_003521.1 + 183918 0.74 0.535931
Target:  5'- gUGCUGCGGCGCUgucGCGACGGCcaGCUc -3'
miRNA:   3'- aGCGAUGCCGUGGu--CGUUGUCGa-CGA- -5'
14195 3' -56.4 NC_003521.1 + 42578 0.75 0.497492
Target:  5'- aUCGCUGCGGCgucaGCCAGCuauuGAUAGC-GCg -3'
miRNA:   3'- -AGCGAUGCCG----UGGUCG----UUGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 47637 0.78 0.335819
Target:  5'- cCGUgacgGCGGCuCUGGCGGCAGCUGCg -3'
miRNA:   3'- aGCGa---UGCCGuGGUCGUUGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 163329 0.81 0.243458
Target:  5'- gCGCgaGCGGCACUAGCGGCGGUUGUa -3'
miRNA:   3'- aGCGa-UGCCGUGGUCGUUGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 87450 0.72 0.664664
Target:  5'- gCGCUAcgacgggcugugcCGGCACCAGaagaucugcCAGCUGCUg -3'
miRNA:   3'- aGCGAU-------------GCCGUGGUCguu------GUCGACGA- -5'
14195 3' -56.4 NC_003521.1 + 76316 0.72 0.655634
Target:  5'- -aGCggaGGUGgCGGCGACAGCUGCg -3'
miRNA:   3'- agCGaugCCGUgGUCGUUGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 110682 0.72 0.635522
Target:  5'- gCGCU-CGGUGgCGGCAGCGGCgGCg -3'
miRNA:   3'- aGCGAuGCCGUgGUCGUUGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 20298 0.73 0.609369
Target:  5'- cUCGC--CGGCGCCAuGCAGCAccaggaggccaccacGCUGCUg -3'
miRNA:   3'- -AGCGauGCCGUGGU-CGUUGU---------------CGACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.