miRNA display CGI


Results 1 - 20 of 357 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14195 3' -56.4 NC_003521.1 + 74184 1.09 0.003797
Target:  5'- gUCGCUACGGCACCAGCAACAGCUGCUa -3'
miRNA:   3'- -AGCGAUGCCGUGGUCGUUGUCGACGA- -5'
14195 3' -56.4 NC_003521.1 + 75167 0.74 0.545708
Target:  5'- aCGC-AUGGUGCCAGCGcgGCGuGCUGCUg -3'
miRNA:   3'- aGCGaUGCCGUGGUCGU--UGU-CGACGA- -5'
14195 3' -56.4 NC_003521.1 + 197263 0.74 0.545708
Target:  5'- gUGCUugacGCGGCGCCGGCGGCgGGgaGCg -3'
miRNA:   3'- aGCGA----UGCCGUGGUCGUUG-UCgaCGa -5'
14195 3' -56.4 NC_003521.1 + 119747 0.65 0.945496
Target:  5'- cCGCguaUGCGGCagcuggaguACCAGCAcaccugggaccggcGCAGCgGCg -3'
miRNA:   3'- aGCG---AUGCCG---------UGGUCGU--------------UGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 163329 0.81 0.243458
Target:  5'- gCGCgaGCGGCACUAGCGGCGGUUGUa -3'
miRNA:   3'- aGCGa-UGCCGUGGUCGUUGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 205331 0.8 0.267478
Target:  5'- aCcCUACGGCGCCuccucggcGGCGGCAGCUGCg -3'
miRNA:   3'- aGcGAUGCCGUGG--------UCGUUGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 47637 0.78 0.335819
Target:  5'- cCGUgacgGCGGCuCUGGCGGCAGCUGCg -3'
miRNA:   3'- aGCGa---UGCCGuGGUCGUUGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 8465 0.77 0.390776
Target:  5'- cCGCUucGCGGUGCCGccGCGACuGCUGCUa -3'
miRNA:   3'- aGCGA--UGCCGUGGU--CGUUGuCGACGA- -5'
14195 3' -56.4 NC_003521.1 + 42578 0.75 0.497492
Target:  5'- aUCGCUGCGGCgucaGCCAGCuauuGAUAGC-GCg -3'
miRNA:   3'- -AGCGAUGCCG----UGGUCG----UUGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 16499 0.74 0.545708
Target:  5'- aCGCUACGaGCACgGGCuGCGGCgcucgGCUc -3'
miRNA:   3'- aGCGAUGC-CGUGgUCGuUGUCGa----CGA- -5'
14195 3' -56.4 NC_003521.1 + 240404 0.74 0.535931
Target:  5'- -gGCUugGccuCGCCAGCAcACAGCUGCa -3'
miRNA:   3'- agCGAugCc--GUGGUCGU-UGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 76355 0.76 0.442321
Target:  5'- -gGCUGCGGCGgCGGCAGCGGCgaccGUg -3'
miRNA:   3'- agCGAUGCCGUgGUCGUUGUCGa---CGa -5'
14195 3' -56.4 NC_003521.1 + 1309 0.88 0.086647
Target:  5'- cCGCUACGGCGCCGGCGacguggcGCGGCUGUa -3'
miRNA:   3'- aGCGAUGCCGUGGUCGU-------UGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 183918 0.74 0.535931
Target:  5'- gUGCUGCGGCGCUgucGCGACGGCcaGCUc -3'
miRNA:   3'- aGCGAUGCCGUGGu--CGUUGUCGa-CGA- -5'
14195 3' -56.4 NC_003521.1 + 179957 0.86 0.112615
Target:  5'- --aCUGCGGCACCAGCAcCAGCUGCg -3'
miRNA:   3'- agcGAUGCCGUGGUCGUuGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 76401 0.76 0.432583
Target:  5'- gCGCUGCuaGCACCAGCGGCGGUgugguggUGCUg -3'
miRNA:   3'- aGCGAUGc-CGUGGUCGUUGUCG-------ACGA- -5'
14195 3' -56.4 NC_003521.1 + 2478 0.74 0.545708
Target:  5'- aCGCgACGGCGCCGGC--CAGCUGa- -3'
miRNA:   3'- aGCGaUGCCGUGGUCGuuGUCGACga -5'
14195 3' -56.4 NC_003521.1 + 190539 0.74 0.545708
Target:  5'- gUGCgGCGGCAgCAGCGGCggacccGGCUGCa -3'
miRNA:   3'- aGCGaUGCCGUgGUCGUUG------UCGACGa -5'
14195 3' -56.4 NC_003521.1 + 170151 0.81 0.243458
Target:  5'- aCGCcguCGGUuuuCCAGCAGCAGCUGCa -3'
miRNA:   3'- aGCGau-GCCGu--GGUCGUUGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 198022 0.8 0.267478
Target:  5'- cCGUUGCGGCGCguGCAGCcgccgGGCUGCa -3'
miRNA:   3'- aGCGAUGCCGUGguCGUUG-----UCGACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.