miRNA display CGI


Results 21 - 40 of 304 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14195 5' -61.6 NC_003521.1 + 195199 0.72 0.410116
Target:  5'- gGCGGCGGU-GGCCGUCuGCGUCGg-- -3'
miRNA:   3'- -CGUCGUCGuCCGGCAGcCGCGGCacu -5'
14195 5' -61.6 NC_003521.1 + 184342 0.73 0.402045
Target:  5'- cGCAGUacugccucuucgGGCGGGCCGUggcgCGGCGCCu--- -3'
miRNA:   3'- -CGUCG------------UCGUCCGGCA----GCCGCGGcacu -5'
14195 5' -61.6 NC_003521.1 + 123229 0.75 0.313424
Target:  5'- gGCGGCGGUAGGUgGUCGuaGCGCCGc-- -3'
miRNA:   3'- -CGUCGUCGUCCGgCAGC--CGCGGCacu -5'
14195 5' -61.6 NC_003521.1 + 222069 0.79 0.177907
Target:  5'- cGCAGCAGCGacCCGUCGGCGCCa--- -3'
miRNA:   3'- -CGUCGUCGUccGGCAGCCGCGGcacu -5'
14195 5' -61.6 NC_003521.1 + 196404 0.71 0.487004
Target:  5'- gGCGGCGGCAGGUagagcaGGUuguagGCCGUGAg -3'
miRNA:   3'- -CGUCGUCGUCCGgcag--CCG-----CGGCACU- -5'
14195 5' -61.6 NC_003521.1 + 103767 0.72 0.451933
Target:  5'- aCAGCAG-GGGCCGggCGGUGCC-UGAg -3'
miRNA:   3'- cGUCGUCgUCCGGCa-GCCGCGGcACU- -5'
14195 5' -61.6 NC_003521.1 + 1625 0.73 0.394076
Target:  5'- uGCuGCGGguGGCUGUUucugGGCGUCGUGc -3'
miRNA:   3'- -CGuCGUCguCCGGCAG----CCGCGGCACu -5'
14195 5' -61.6 NC_003521.1 + 176283 0.81 0.124072
Target:  5'- aGCAGCAGCAgacGGgCGUCGGCGUCGUc- -3'
miRNA:   3'- -CGUCGUCGU---CCgGCAGCCGCGGCAcu -5'
14195 5' -61.6 NC_003521.1 + 102353 0.72 0.451933
Target:  5'- gGCGGCAGguGGCagaugUGGCGCCGc-- -3'
miRNA:   3'- -CGUCGUCguCCGgca--GCCGCGGCacu -5'
14195 5' -61.6 NC_003521.1 + 98470 0.82 0.104492
Target:  5'- gGCGGCGGC-GGCCG-CGGCGgCCGUGGc -3'
miRNA:   3'- -CGUCGUCGuCCGGCaGCCGC-GGCACU- -5'
14195 5' -61.6 NC_003521.1 + 23835 0.73 0.402045
Target:  5'- cGUGGCGGgAGGCCGaccugcUGGCGCUGUGu -3'
miRNA:   3'- -CGUCGUCgUCCGGCa-----GCCGCGGCACu -5'
14195 5' -61.6 NC_003521.1 + 139765 0.72 0.418287
Target:  5'- aCGGCAGgAuccGGCCGUCGGCgGCCGccaUGGa -3'
miRNA:   3'- cGUCGUCgU---CCGGCAGCCG-CGGC---ACU- -5'
14195 5' -61.6 NC_003521.1 + 91010 0.73 0.386209
Target:  5'- aGCuGCAGCAGGUCGgucaCGGCcgGCCGUu- -3'
miRNA:   3'- -CGuCGUCGUCCGGCa---GCCG--CGGCAcu -5'
14195 5' -61.6 NC_003521.1 + 161186 0.75 0.313424
Target:  5'- uGCAGCAGCAGacgacGCCGa-GGCGCCGcGGu -3'
miRNA:   3'- -CGUCGUCGUC-----CGGCagCCGCGGCaCU- -5'
14195 5' -61.6 NC_003521.1 + 122515 0.75 0.293714
Target:  5'- cGCGGCGGCGGGCagGcCGGCgGCgGUGGu -3'
miRNA:   3'- -CGUCGUCGUCCGg-CaGCCG-CGgCACU- -5'
14195 5' -61.6 NC_003521.1 + 39417 0.76 0.239867
Target:  5'- -uGGCA-CAGGCCGUccagucccguaggCGGCGCCGUGGc -3'
miRNA:   3'- cgUCGUcGUCCGGCA-------------GCCGCGGCACU- -5'
14195 5' -61.6 NC_003521.1 + 13993 0.71 0.505017
Target:  5'- cGCGGCGGCGGGCgaGgaccccaUGGCGCUGUa- -3'
miRNA:   3'- -CGUCGUCGUCCGg-Ca------GCCGCGGCAcu -5'
14195 5' -61.6 NC_003521.1 + 7988 0.71 0.50411
Target:  5'- cGCGGCGGCGGGggagguaCCGgggCaGCGCCGUa- -3'
miRNA:   3'- -CGUCGUCGUCC-------GGCa--GcCGCGGCAcu -5'
14195 5' -61.6 NC_003521.1 + 165116 0.71 0.484329
Target:  5'- aGCGGCGGCuguggugcggacggGGGCUGgaccgCGGUGCCGgcgUGAu -3'
miRNA:   3'- -CGUCGUCG--------------UCCGGCa----GCCGCGGC---ACU- -5'
14195 5' -61.6 NC_003521.1 + 138033 0.71 0.460573
Target:  5'- -gAGCuGGC-GGCCGcCGGCGCCGUc- -3'
miRNA:   3'- cgUCG-UCGuCCGGCaGCCGCGGCAcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.