miRNA display CGI


Results 1 - 20 of 304 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14195 5' -61.6 NC_003521.1 + 74219 1.1 0.001343
Target:  5'- aGCAGCAGCAGGCCGUCGGCGCCGUGAc -3'
miRNA:   3'- -CGUCGUCGUCCGGCAGCCGCGGCACU- -5'
14195 5' -61.6 NC_003521.1 + 1625 0.73 0.394076
Target:  5'- uGCuGCGGguGGCUGUUucugGGCGUCGUGc -3'
miRNA:   3'- -CGuCGUCguCCGGCAG----CCGCGGCACu -5'
14195 5' -61.6 NC_003521.1 + 184342 0.73 0.402045
Target:  5'- cGCAGUacugccucuucgGGCGGGCCGUggcgCGGCGCCu--- -3'
miRNA:   3'- -CGUCG------------UCGUCCGGCA----GCCGCGGcacu -5'
14195 5' -61.6 NC_003521.1 + 239982 0.66 0.793727
Target:  5'- cCAGCAGUcuucgGGGuaGUCGGUGCCu--- -3'
miRNA:   3'- cGUCGUCG-----UCCggCAGCCGCGGcacu -5'
14195 5' -61.6 NC_003521.1 + 39417 0.76 0.239867
Target:  5'- -uGGCA-CAGGCCGUccagucccguaggCGGCGCCGUGGc -3'
miRNA:   3'- cgUCGUcGUCCGGCA-------------GCCGCGGCACU- -5'
14195 5' -61.6 NC_003521.1 + 76358 0.75 0.287363
Target:  5'- uGCGGCGGC-GGCag-CGGCGaCCGUGAc -3'
miRNA:   3'- -CGUCGUCGuCCGgcaGCCGC-GGCACU- -5'
14195 5' -61.6 NC_003521.1 + 122515 0.75 0.293714
Target:  5'- cGCGGCGGCGGGCagGcCGGCgGCgGUGGu -3'
miRNA:   3'- -CGUCGUCGUCCGg-CaGCCG-CGgCACU- -5'
14195 5' -61.6 NC_003521.1 + 104260 0.75 0.300175
Target:  5'- uGCAGCGGCAGcuGCCaGUCGGCGgCGa-- -3'
miRNA:   3'- -CGUCGUCGUC--CGG-CAGCCGCgGCacu -5'
14195 5' -61.6 NC_003521.1 + 161186 0.75 0.313424
Target:  5'- uGCAGCAGCAGacgacGCCGa-GGCGCCGcGGu -3'
miRNA:   3'- -CGUCGUCGUC-----CGGCagCCGCGGCaCU- -5'
14195 5' -61.6 NC_003521.1 + 129313 0.73 0.389343
Target:  5'- gGCGGCgggaagaggucgcccAGCAGGCgGUUGaGCGCCGcGAa -3'
miRNA:   3'- -CGUCG---------------UCGUCCGgCAGC-CGCGGCaCU- -5'
14195 5' -61.6 NC_003521.1 + 44164 0.73 0.370791
Target:  5'- aGCAGCAGCuGGcGCCGUCGGUacuCCGcGAg -3'
miRNA:   3'- -CGUCGUCG-UC-CGGCAGCCGc--GGCaCU- -5'
14195 5' -61.6 NC_003521.1 + 123229 0.75 0.313424
Target:  5'- gGCGGCGGUAGGUgGUCGuaGCGCCGc-- -3'
miRNA:   3'- -CGUCGUCGUCCGgCAGC--CGCGGCacu -5'
14195 5' -61.6 NC_003521.1 + 98470 0.82 0.104492
Target:  5'- gGCGGCGGC-GGCCG-CGGCGgCCGUGGc -3'
miRNA:   3'- -CGUCGUCGuCCGGCaGCCGC-GGCACU- -5'
14195 5' -61.6 NC_003521.1 + 91010 0.73 0.386209
Target:  5'- aGCuGCAGCAGGUCGgucaCGGCcgGCCGUu- -3'
miRNA:   3'- -CGuCGUCGUCCGGCa---GCCG--CGGCAcu -5'
14195 5' -61.6 NC_003521.1 + 176283 0.81 0.124072
Target:  5'- aGCAGCAGCAgacGGgCGUCGGCGUCGUc- -3'
miRNA:   3'- -CGUCGUCGU---CCgGCAGCCGCGGCAcu -5'
14195 5' -61.6 NC_003521.1 + 198210 0.75 0.306745
Target:  5'- gGCGGCGaCGGcGCCGcCGGCGgCCGUGGu -3'
miRNA:   3'- -CGUCGUcGUC-CGGCaGCCGC-GGCACU- -5'
14195 5' -61.6 NC_003521.1 + 123571 0.73 0.386209
Target:  5'- gGCGGUGGCGGGauggCGgCGGCGCCGgGAg -3'
miRNA:   3'- -CGUCGUCGUCCg---GCaGCCGCGGCaCU- -5'
14195 5' -61.6 NC_003521.1 + 23835 0.73 0.402045
Target:  5'- cGUGGCGGgAGGCCGaccugcUGGCGCUGUGu -3'
miRNA:   3'- -CGUCGUCgUCCGGCa-----GCCGCGGCACu -5'
14195 5' -61.6 NC_003521.1 + 222069 0.79 0.177907
Target:  5'- cGCAGCAGCGacCCGUCGGCGCCa--- -3'
miRNA:   3'- -CGUCGUCGUccGGCAGCCGCGGcacu -5'
14195 5' -61.6 NC_003521.1 + 123181 0.75 0.287363
Target:  5'- gGCGGCGGCgggggaccguAGGCCGcauaCGGCGCCGgguagGAc -3'
miRNA:   3'- -CGUCGUCG----------UCCGGCa---GCCGCGGCa----CU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.