Results 1 - 20 of 430 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14197 | 3' | -58.5 | NC_003521.1 | + | 73241 | 1.1 | 0.002215 |
Target: 5'- gAGCGGCAACAGCAGCGGCGUGACGACg -3' miRNA: 3'- -UCGCCGUUGUCGUCGCCGCACUGCUG- -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 98637 | 0.97 | 0.015981 |
Target: 5'- cGGCGGCGGCGGUAGCGGCGUcGACGACg -3' miRNA: 3'- -UCGCCGUUGUCGUCGCCGCA-CUGCUG- -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 76358 | 0.92 | 0.032669 |
Target: 5'- uGCGGCGGCGGCAGCGGCGaccgUGACGGCc -3' miRNA: 3'- uCGCCGUUGUCGUCGCCGC----ACUGCUG- -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 110687 | 0.91 | 0.041393 |
Target: 5'- cGGUGGCGGCAGCGGCGGCGccgccGACGACg -3' miRNA: 3'- -UCGCCGUUGUCGUCGCCGCa----CUGCUG- -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 98472 | 0.9 | 0.04478 |
Target: 5'- cGGCGGCGGCcGCGGCGGcCGUGGCGGCg -3' miRNA: 3'- -UCGCCGUUGuCGUCGCC-GCACUGCUG- -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 74792 | 0.89 | 0.058135 |
Target: 5'- cGGCGGCAGCGGUAGCGGCGagacgcggacgGACGGCg -3' miRNA: 3'- -UCGCCGUUGUCGUCGCCGCa----------CUGCUG- -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 85110 | 0.88 | 0.067925 |
Target: 5'- -uCGGCGGCGGCAGCGGCG-GGCGGCa -3' miRNA: 3'- ucGCCGUUGUCGUCGCCGCaCUGCUG- -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 190540 | 0.88 | 0.069704 |
Target: 5'- uGCGGCGGCAGCAGCGGCG-GAccCGGCu -3' miRNA: 3'- uCGCCGUUGUCGUCGCCGCaCU--GCUG- -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 123614 | 0.86 | 0.087858 |
Target: 5'- cAGgGGCAGCcgccguAGCAGCGGCGUGAUGAUg -3' miRNA: 3'- -UCgCCGUUG------UCGUCGCCGCACUGCUG- -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 76222 | 0.85 | 0.099807 |
Target: 5'- gAGUGGCGGCGGcCGGUGGCGUGGCGGu -3' miRNA: 3'- -UCGCCGUUGUC-GUCGCCGCACUGCUg -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 108281 | 0.84 | 0.110454 |
Target: 5'- cGGCGGCAccgaggGCGGUGGUGGCgGUGACGACg -3' miRNA: 3'- -UCGCCGU------UGUCGUCGCCG-CACUGCUG- -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 186849 | 0.83 | 0.128432 |
Target: 5'- uGGCGGCc-CAGCGGCGGCGUGcagcACGGCu -3' miRNA: 3'- -UCGCCGuuGUCGUCGCCGCAC----UGCUG- -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 116683 | 0.83 | 0.13168 |
Target: 5'- cAGCGGCGGCggaGGCAGCGGCGcgGGCGGg -3' miRNA: 3'- -UCGCCGUUG---UCGUCGCCGCa-CUGCUg -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 218704 | 0.83 | 0.138404 |
Target: 5'- aGGCGGaggaGACGGCGGCGGCGgcgGGCGAg -3' miRNA: 3'- -UCGCCg---UUGUCGUCGCCGCa--CUGCUg -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 168537 | 0.83 | 0.145442 |
Target: 5'- uGGCGGCcagcGCGGCGGCGGCGcUGGCGGg -3' miRNA: 3'- -UCGCCGu---UGUCGUCGCCGC-ACUGCUg -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 76324 | 0.83 | 0.145442 |
Target: 5'- uGGCGGCGACAGCuGCGGaggcgacgGUGACGGCn -3' miRNA: 3'- -UCGCCGUUGUCGuCGCCg-------CACUGCUG- -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 163201 | 0.82 | 0.149083 |
Target: 5'- uGGUGGCGGCGGCAGCGGCaGUagcuccGGCGGCc -3' miRNA: 3'- -UCGCCGUUGUCGUCGCCG-CA------CUGCUG- -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 196726 | 0.82 | 0.152806 |
Target: 5'- cGGCGGCGACGGUGGUGGCG--GCGGCg -3' miRNA: 3'- -UCGCCGUUGUCGUCGCCGCacUGCUG- -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 140549 | 0.82 | 0.156613 |
Target: 5'- aGGCGGUGGCugcuGCGGCGGCGgcGGCGACa -3' miRNA: 3'- -UCGCCGUUGu---CGUCGCCGCa-CUGCUG- -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 150564 | 0.82 | 0.156613 |
Target: 5'- gGGUGGUGGCGGCGGCGGCGgcGCGGCu -3' miRNA: 3'- -UCGCCGUUGUCGUCGCCGCacUGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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