miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14197 5' -55.2 NC_003521.1 + 49675 0.67 0.946016
Target:  5'- -gGCCGG-GCGagCGCggcgCUGUCGCCGu -3'
miRNA:   3'- aaUGGCUgUGCagGCGa---GAUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 118587 0.68 0.937013
Target:  5'- ---aCGugGCGg-CGCUCaGUCGCCGg -3'
miRNA:   3'- aaugGCugUGCagGCGAGaUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 25333 0.7 0.871414
Target:  5'- -gGCCGGCACGUuguccCUGCUCcuggccuUCGCCu -3'
miRNA:   3'- aaUGGCUGUGCA-----GGCGAGau-----AGCGGc -5'
14197 5' -55.2 NC_003521.1 + 129433 0.73 0.706152
Target:  5'- -aGCCGcugcaGCGCGUCCcCUCcGUCGCCGc -3'
miRNA:   3'- aaUGGC-----UGUGCAGGcGAGaUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 107431 0.67 0.952576
Target:  5'- -aGCCGACGCGaaagcgcggaccgCCGCgCUGU-GCCGg -3'
miRNA:   3'- aaUGGCUGUGCa------------GGCGaGAUAgCGGC- -5'
14197 5' -55.2 NC_003521.1 + 202617 0.67 0.946016
Target:  5'- -cAUCGGCGCcaucGUCCGCUacaucGUCGCCu -3'
miRNA:   3'- aaUGGCUGUG----CAGGCGAga---UAGCGGc -5'
14197 5' -55.2 NC_003521.1 + 186519 0.68 0.932172
Target:  5'- -aGCaCGACGCG-CUGCUCUacGUgGCCa -3'
miRNA:   3'- aaUG-GCUGUGCaGGCGAGA--UAgCGGc -5'
14197 5' -55.2 NC_003521.1 + 221942 0.74 0.626803
Target:  5'- aUGCaCGACACGUCCagGCg--GUCGCCGu -3'
miRNA:   3'- aAUG-GCUGUGCAGG--CGagaUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 115494 0.67 0.946016
Target:  5'- -gGCCG-CGUGU-CGCUCUGUgGCCGg -3'
miRNA:   3'- aaUGGCuGUGCAgGCGAGAUAgCGGC- -5'
14197 5' -55.2 NC_003521.1 + 72469 0.75 0.5969
Target:  5'- cUGCCGcuACGCG-CCGCUCU-UCGCCa -3'
miRNA:   3'- aAUGGC--UGUGCaGGCGAGAuAGCGGc -5'
14197 5' -55.2 NC_003521.1 + 203966 0.68 0.935104
Target:  5'- cUUGCCGGCccACGUCagguGCUCUAcccggcacagcagCGCCGg -3'
miRNA:   3'- -AAUGGCUG--UGCAGg---CGAGAUa------------GCGGC- -5'
14197 5' -55.2 NC_003521.1 + 70644 0.67 0.946016
Target:  5'- -cACCGGCACcaCCGCUCcgaaGUCGaCCa -3'
miRNA:   3'- aaUGGCUGUGcaGGCGAGa---UAGC-GGc -5'
14197 5' -55.2 NC_003521.1 + 184016 0.69 0.891951
Target:  5'- -gGCCGACuCGUUCGCgcgCga-CGCCGg -3'
miRNA:   3'- aaUGGCUGuGCAGGCGa--GauaGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 22378 0.69 0.885317
Target:  5'- gUGCCGGcCAUGUccuccguggugCCGCcgCUGUCGCUGg -3'
miRNA:   3'- aAUGGCU-GUGCA-----------GGCGa-GAUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 135892 0.72 0.744656
Target:  5'- -aACCGACgGCGUCgCGCUC-GUCGUCa -3'
miRNA:   3'- aaUGGCUG-UGCAG-GCGAGaUAGCGGc -5'
14197 5' -55.2 NC_003521.1 + 124336 0.73 0.735149
Target:  5'- -gGCCGuCACGgaCGCUCUucAUCGCCGc -3'
miRNA:   3'- aaUGGCuGUGCagGCGAGA--UAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 38401 0.67 0.960688
Target:  5'- -gGCCGGC-CGUCCGUUCcccgaacgggcgGUUGCUGc -3'
miRNA:   3'- aaUGGCUGuGCAGGCGAGa-----------UAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 117531 0.67 0.957858
Target:  5'- -cGCCGAguCGcCCGCggaccugacgCUGUCGUCGc -3'
miRNA:   3'- aaUGGCUguGCaGGCGa---------GAUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 102940 0.67 0.950182
Target:  5'- -gGCCGAgGCGUCgcgguccaggCGCUCgggCGUCGg -3'
miRNA:   3'- aaUGGCUgUGCAG----------GCGAGauaGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 109746 0.67 0.950182
Target:  5'- -aGCCcGCGCGagCCGCg--GUCGCCGc -3'
miRNA:   3'- aaUGGcUGUGCa-GGCGagaUAGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.