Results 1 - 20 of 103 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14197 | 5' | -55.2 | NC_003521.1 | + | 73278 | 1.06 | 0.008491 |
Target: 5'- aUUACCGACACGUCCGCUCUAUCGCCGu -3' miRNA: 3'- -AAUGGCUGUGCAGGCGAGAUAGCGGC- -5' |
|||||||
14197 | 5' | -55.2 | NC_003521.1 | + | 186519 | 0.68 | 0.932172 |
Target: 5'- -aGCaCGACGCG-CUGCUCUacGUgGCCa -3' miRNA: 3'- aaUG-GCUGUGCaGGCGAGA--UAgCGGc -5' |
|||||||
14197 | 5' | -55.2 | NC_003521.1 | + | 118587 | 0.68 | 0.937013 |
Target: 5'- ---aCGugGCGg-CGCUCaGUCGCCGg -3' miRNA: 3'- aaugGCugUGCagGCGAGaUAGCGGC- -5' |
|||||||
14197 | 5' | -55.2 | NC_003521.1 | + | 148817 | 0.66 | 0.97689 |
Target: 5'- -cGCCGcCGCGccucgccgcucccgcUCCGUUCg--CGCCGg -3' miRNA: 3'- aaUGGCuGUGC---------------AGGCGAGauaGCGGC- -5' |
|||||||
14197 | 5' | -55.2 | NC_003521.1 | + | 124336 | 0.73 | 0.735149 |
Target: 5'- -gGCCGuCACGgaCGCUCUucAUCGCCGc -3' miRNA: 3'- aaUGGCuGUGCagGCGAGA--UAGCGGC- -5' |
|||||||
14197 | 5' | -55.2 | NC_003521.1 | + | 166235 | 0.72 | 0.740864 |
Target: 5'- -cGCCGGcCGCGggacgccgcgccgCCGCUCcGUCGCCGc -3' miRNA: 3'- aaUGGCU-GUGCa------------GGCGAGaUAGCGGC- -5' |
|||||||
14197 | 5' | -55.2 | NC_003521.1 | + | 135892 | 0.72 | 0.744656 |
Target: 5'- -aACCGACgGCGUCgCGCUC-GUCGUCa -3' miRNA: 3'- aaUGGCUG-UGCAG-GCGAGaUAGCGGc -5' |
|||||||
14197 | 5' | -55.2 | NC_003521.1 | + | 217301 | 0.7 | 0.856695 |
Target: 5'- -cACCGugAUGaggCUGCUCguuUCGCCGu -3' miRNA: 3'- aaUGGCugUGCa--GGCGAGau-AGCGGC- -5' |
|||||||
14197 | 5' | -55.2 | NC_003521.1 | + | 22378 | 0.69 | 0.885317 |
Target: 5'- gUGCCGGcCAUGUccuccguggugCCGCcgCUGUCGCUGg -3' miRNA: 3'- aAUGGCU-GUGCA-----------GGCGa-GAUAGCGGC- -5' |
|||||||
14197 | 5' | -55.2 | NC_003521.1 | + | 115521 | 0.68 | 0.921809 |
Target: 5'- -cACCGcCGCGUCCGCgaacgacgCggcUCGCCu -3' miRNA: 3'- aaUGGCuGUGCAGGCGa-------Gau-AGCGGc -5' |
|||||||
14197 | 5' | -55.2 | NC_003521.1 | + | 152328 | 0.69 | 0.891951 |
Target: 5'- -cGCUG-CGCGUgCCGCUCUAccCGCCc -3' miRNA: 3'- aaUGGCuGUGCA-GGCGAGAUa-GCGGc -5' |
|||||||
14197 | 5' | -55.2 | NC_003521.1 | + | 25333 | 0.7 | 0.871414 |
Target: 5'- -gGCCGGCACGUuguccCUGCUCcuggccuUCGCCu -3' miRNA: 3'- aaUGGCUGUGCA-----GGCGAGau-----AGCGGc -5' |
|||||||
14197 | 5' | -55.2 | NC_003521.1 | + | 72469 | 0.75 | 0.5969 |
Target: 5'- cUGCCGcuACGCG-CCGCUCU-UCGCCa -3' miRNA: 3'- aAUGGC--UGUGCaGGCGAGAuAGCGGc -5' |
|||||||
14197 | 5' | -55.2 | NC_003521.1 | + | 184016 | 0.69 | 0.891951 |
Target: 5'- -gGCCGACuCGUUCGCgcgCga-CGCCGg -3' miRNA: 3'- aaUGGCUGuGCAGGCGa--GauaGCGGC- -5' |
|||||||
14197 | 5' | -55.2 | NC_003521.1 | + | 221942 | 0.74 | 0.626803 |
Target: 5'- aUGCaCGACACGUCCagGCg--GUCGCCGu -3' miRNA: 3'- aAUG-GCUGUGCAGG--CGagaUAGCGGC- -5' |
|||||||
14197 | 5' | -55.2 | NC_003521.1 | + | 161201 | 0.7 | 0.864154 |
Target: 5'- -cGCCGAgGCG-CCGCg--GUCGCCc -3' miRNA: 3'- aaUGGCUgUGCaGGCGagaUAGCGGc -5' |
|||||||
14197 | 5' | -55.2 | NC_003521.1 | + | 164966 | 0.68 | 0.921809 |
Target: 5'- -gGCCGugACGaaCGUgCUGUCGCCc -3' miRNA: 3'- aaUGGCugUGCagGCGaGAUAGCGGc -5' |
|||||||
14197 | 5' | -55.2 | NC_003521.1 | + | 203966 | 0.68 | 0.935104 |
Target: 5'- cUUGCCGGCccACGUCagguGCUCUAcccggcacagcagCGCCGg -3' miRNA: 3'- -AAUGGCUG--UGCAGg---CGAGAUa------------GCGGC- -5' |
|||||||
14197 | 5' | -55.2 | NC_003521.1 | + | 129433 | 0.73 | 0.706152 |
Target: 5'- -aGCCGcugcaGCGCGUCCcCUCcGUCGCCGc -3' miRNA: 3'- aaUGGC-----UGUGCAGGcGAGaUAGCGGC- -5' |
|||||||
14197 | 5' | -55.2 | NC_003521.1 | + | 97925 | 0.72 | 0.74371 |
Target: 5'- -cGCCGGCugaugGCG-CCGCUCUccaagggAUCGCCGc -3' miRNA: 3'- aaUGGCUG-----UGCaGGCGAGA-------UAGCGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home