miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14211 5' -53.3 NC_003521.1 + 70042 0.66 0.992117
Target:  5'- -cGGGACgUGG--GGCGCCAaGACGUu -3'
miRNA:   3'- ucUCCUGaACCacUCGUGGUaCUGCG- -5'
14211 5' -53.3 NC_003521.1 + 197847 0.66 0.992117
Target:  5'- -cAGGuCgucGGUGGGCGCCGgcgGGuCGCg -3'
miRNA:   3'- ucUCCuGaa-CCACUCGUGGUa--CU-GCG- -5'
14211 5' -53.3 NC_003521.1 + 111198 0.66 0.991007
Target:  5'- --cGGAC--GGUGGGCuggGCgAUGGCGCc -3'
miRNA:   3'- ucuCCUGaaCCACUCG---UGgUACUGCG- -5'
14211 5' -53.3 NC_003521.1 + 112615 0.66 0.991007
Target:  5'- aAGAuGGACUUcGUGGacGCGCuCAaGACGCu -3'
miRNA:   3'- -UCU-CCUGAAcCACU--CGUG-GUaCUGCG- -5'
14211 5' -53.3 NC_003521.1 + 69100 0.66 0.991007
Target:  5'- uGGuGGuACUUGGUGuGCACgGUGuuauUGUg -3'
miRNA:   3'- -UCuCC-UGAACCACuCGUGgUACu---GCG- -5'
14211 5' -53.3 NC_003521.1 + 121681 0.66 0.991007
Target:  5'- cGGAGGGCc--GUGAuGCGCgGUGAgGUa -3'
miRNA:   3'- -UCUCCUGaacCACU-CGUGgUACUgCG- -5'
14211 5' -53.3 NC_003521.1 + 162223 0.66 0.991007
Target:  5'- cGGGGGG--UGGU-AGCGCCGacGGCGCu -3'
miRNA:   3'- -UCUCCUgaACCAcUCGUGGUa-CUGCG- -5'
14211 5' -53.3 NC_003521.1 + 216908 0.66 0.991007
Target:  5'- aGGAGGGCgcGGUG-GCAgCG-GAgGCg -3'
miRNA:   3'- -UCUCCUGaaCCACuCGUgGUaCUgCG- -5'
14211 5' -53.3 NC_003521.1 + 29070 0.66 0.991007
Target:  5'- --uGGcCUuccUGGUGGGCAUCGagcucauggUGGCGCa -3'
miRNA:   3'- ucuCCuGA---ACCACUCGUGGU---------ACUGCG- -5'
14211 5' -53.3 NC_003521.1 + 67271 0.66 0.991007
Target:  5'- aGGAGGGCgggcaGGgagGAcagccgcuGCGCC-UGACGCc -3'
miRNA:   3'- -UCUCCUGaa---CCa--CU--------CGUGGuACUGCG- -5'
14211 5' -53.3 NC_003521.1 + 128166 0.66 0.989778
Target:  5'- aGGcAGGGCgUGGggucgUGcAGCACCggGugGCa -3'
miRNA:   3'- -UC-UCCUGaACC-----AC-UCGUGGuaCugCG- -5'
14211 5' -53.3 NC_003521.1 + 883 0.66 0.98842
Target:  5'- uGAcGGAgcUGGaauaccaagccaUGGGCACCAucUGGCGCa -3'
miRNA:   3'- uCU-CCUgaACC------------ACUCGUGGU--ACUGCG- -5'
14211 5' -53.3 NC_003521.1 + 232565 0.66 0.98842
Target:  5'- cGGGGGCUgcugugUGGUGAGCGgggggcgaCAUG-CGUa -3'
miRNA:   3'- uCUCCUGA------ACCACUCGUg-------GUACuGCG- -5'
14211 5' -53.3 NC_003521.1 + 201110 0.66 0.98842
Target:  5'- uGAcGGAgcUGGaauaccaagccaUGGGCACCAucUGGCGCa -3'
miRNA:   3'- uCU-CCUgaACC------------ACUCGUGGU--ACUGCG- -5'
14211 5' -53.3 NC_003521.1 + 71962 0.66 0.98842
Target:  5'- uGGGGuuCUUGcagaUGAGCccggcguCCGUGACGCg -3'
miRNA:   3'- uCUCCu-GAACc---ACUCGu------GGUACUGCG- -5'
14211 5' -53.3 NC_003521.1 + 35209 0.66 0.98842
Target:  5'- cAGGGGGCgcgcgGGUcggaucGAGCGuCCucggGGCGCg -3'
miRNA:   3'- -UCUCCUGaa---CCA------CUCGU-GGua--CUGCG- -5'
14211 5' -53.3 NC_003521.1 + 69879 0.66 0.986928
Target:  5'- cGGGGAUcaUGGUcAGCACCAa-ACGCa -3'
miRNA:   3'- uCUCCUGa-ACCAcUCGUGGUacUGCG- -5'
14211 5' -53.3 NC_003521.1 + 204700 0.66 0.986928
Target:  5'- cGAGGGCagcgaGGUGAcCACCAcGGCGg -3'
miRNA:   3'- uCUCCUGaa---CCACUcGUGGUaCUGCg -5'
14211 5' -53.3 NC_003521.1 + 113571 0.66 0.986928
Target:  5'- aGGAGGACgcggUGGggcUGGGC-CUcgGGgGCa -3'
miRNA:   3'- -UCUCCUGa---ACC---ACUCGuGGuaCUgCG- -5'
14211 5' -53.3 NC_003521.1 + 128925 0.66 0.986928
Target:  5'- uGAGGGCcUGGc--GCGCCAgcgUGGCGUu -3'
miRNA:   3'- uCUCCUGaACCacuCGUGGU---ACUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.