miRNA display CGI


Results 1 - 20 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14228 3' -68.6 NC_003521.1 + 30077 0.66 0.505103
Target:  5'- -cGUCCCCGCCGgCCGcucacgGUagcaGCgCCGAg -3'
miRNA:   3'- gaCGGGGGCGGCgGGCa-----CGg---CG-GGCU- -5'
14228 3' -68.6 NC_003521.1 + 191765 0.66 0.505103
Target:  5'- --uUCUCUGCUGUCCGgucGCCuGCCCGAc -3'
miRNA:   3'- gacGGGGGCGGCGGGCa--CGG-CGGGCU- -5'
14228 3' -68.6 NC_003521.1 + 160346 0.66 0.505103
Target:  5'- -gGCCUCCGUCGUCgagggCGUcGCCGCCUu- -3'
miRNA:   3'- gaCGGGGGCGGCGG-----GCA-CGGCGGGcu -5'
14228 3' -68.6 NC_003521.1 + 201501 0.66 0.505103
Target:  5'- gCUGaCCCuaGCCGCCCGcgacGCCGa-CGAa -3'
miRNA:   3'- -GAC-GGGggCGGCGGGCa---CGGCggGCU- -5'
14228 3' -68.6 NC_003521.1 + 167976 0.66 0.505103
Target:  5'- gUGCCUaCCGUCGCCgCGcccagGCCGUCgCGGu -3'
miRNA:   3'- gACGGG-GGCGGCGG-GCa----CGGCGG-GCU- -5'
14228 3' -68.6 NC_003521.1 + 98152 0.66 0.505103
Target:  5'- gCUGCCgCCGUCGCUgcugaCGgcGCUGCgCCGAc -3'
miRNA:   3'- -GACGGgGGCGGCGG-----GCa-CGGCG-GGCU- -5'
14228 3' -68.6 NC_003521.1 + 38090 0.66 0.505103
Target:  5'- -gGUCCCCG-CGCCCcUGCCGCgUCa- -3'
miRNA:   3'- gaCGGGGGCgGCGGGcACGGCG-GGcu -5'
14228 3' -68.6 NC_003521.1 + 194387 0.66 0.505103
Target:  5'- -aGCCCCCGCaGCCCc-GCCGgauaCCCu- -3'
miRNA:   3'- gaCGGGGGCGgCGGGcaCGGC----GGGcu -5'
14228 3' -68.6 NC_003521.1 + 208921 0.66 0.505103
Target:  5'- gCUGCCUgCCGCaguuCCUGUGCCgcgGCCUGGc -3'
miRNA:   3'- -GACGGG-GGCGgc--GGGCACGG---CGGGCU- -5'
14228 3' -68.6 NC_003521.1 + 122096 0.66 0.505103
Target:  5'- cCUGCagCCCG-UGCCgGUGCCGCgCCc- -3'
miRNA:   3'- -GACGg-GGGCgGCGGgCACGGCG-GGcu -5'
14228 3' -68.6 NC_003521.1 + 1273 0.66 0.505103
Target:  5'- gCUGaCCCuaGCCGCCCGcGaCGCCgaCGAa -3'
miRNA:   3'- -GAC-GGGggCGGCGGGCaCgGCGG--GCU- -5'
14228 3' -68.6 NC_003521.1 + 107445 0.66 0.505103
Target:  5'- -cGCggaCCGCCGCgCUGUGCCGgCgGAc -3'
miRNA:   3'- gaCGgg-GGCGGCG-GGCACGGCgGgCU- -5'
14228 3' -68.6 NC_003521.1 + 103957 0.66 0.504239
Target:  5'- -cGCCaCCCGCCGCgaguCCGUGCauuucugCGUCUGc -3'
miRNA:   3'- gaCGG-GGGCGGCG----GGCACG-------GCGGGCu -5'
14228 3' -68.6 NC_003521.1 + 53556 0.66 0.499929
Target:  5'- gUGCCgCUGUCGCgucucucuagcucucCCGggGCCGCCuCGAa -3'
miRNA:   3'- gACGGgGGCGGCG---------------GGCa-CGGCGG-GCU- -5'
14228 3' -68.6 NC_003521.1 + 203837 0.66 0.496493
Target:  5'- -cGCCCUCGUCGCggaUGUcGCCG-CCGAg -3'
miRNA:   3'- gaCGGGGGCGGCGg--GCA-CGGCgGGCU- -5'
14228 3' -68.6 NC_003521.1 + 172774 0.66 0.496493
Target:  5'- gCUGCCaCCgggggCGCCGCggaCCacGCCGCCCGu -3'
miRNA:   3'- -GACGG-GG-----GCGGCG---GGcaCGGCGGGCu -5'
14228 3' -68.6 NC_003521.1 + 77447 0.66 0.496493
Target:  5'- aUGCCgCCGUuggUGCCCGUgacacuGCCGCCg-- -3'
miRNA:   3'- gACGGgGGCG---GCGGGCA------CGGCGGgcu -5'
14228 3' -68.6 NC_003521.1 + 163412 0.66 0.496493
Target:  5'- gUGgCCCCGUCGUCgGcUGCCGCUg-- -3'
miRNA:   3'- gACgGGGGCGGCGGgC-ACGGCGGgcu -5'
14228 3' -68.6 NC_003521.1 + 157992 0.66 0.496493
Target:  5'- -gGCaCCU-CCaCCUGUGCCGCCCGGu -3'
miRNA:   3'- gaCGgGGGcGGcGGGCACGGCGGGCU- -5'
14228 3' -68.6 NC_003521.1 + 44096 0.66 0.496493
Target:  5'- -cGCCgCCGCCaccaCCGUcGCCGCCgGu -3'
miRNA:   3'- gaCGGgGGCGGcg--GGCA-CGGCGGgCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.