Results 1 - 20 of 200 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14235 | 5' | -58.3 | NC_003521.1 | + | 239917 | 0.67 | 0.793038 |
Target: 5'- aACGCCGuGCGCCAGaugGUGCcCAu -3' miRNA: 3'- cUGCGGCuCGUGGUCguaCGCGuGUu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 239789 | 0.68 | 0.774109 |
Target: 5'- cGACGCCGgccaucuGGCugCgcGGCGugaUGCGCGCGu -3' miRNA: 3'- -CUGCGGC-------UCGugG--UCGU---ACGCGUGUu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 233296 | 0.68 | 0.765827 |
Target: 5'- aGGCGUCGuucGCAaugccccaaaCAGCGUGCGCGCu- -3' miRNA: 3'- -CUGCGGCu--CGUg---------GUCGUACGCGUGuu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 228740 | 0.72 | 0.549602 |
Target: 5'- uGCGUggUGAGCAgCGGCGUGCGCAUc- -3' miRNA: 3'- cUGCG--GCUCGUgGUCGUACGCGUGuu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 226238 | 0.69 | 0.718317 |
Target: 5'- -gUGCCGuAGC-CCGGCGUGUGCAg-- -3' miRNA: 3'- cuGCGGC-UCGuGGUCGUACGCGUguu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 226029 | 0.72 | 0.543745 |
Target: 5'- cGGCGCCGAaccaguccagcaGCACCAGCAccucggccacgaagGCGCGCc- -3' miRNA: 3'- -CUGCGGCU------------CGUGGUCGUa-------------CGCGUGuu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 225118 | 0.66 | 0.861917 |
Target: 5'- gGAUGCCGAGCGaCAGCAccuggucgacgugguUGCGgACc- -3' miRNA: 3'- -CUGCGGCUCGUgGUCGU---------------ACGCgUGuu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 224863 | 0.67 | 0.807917 |
Target: 5'- --gGCCGuagcGCGCCAGCucguccaggugcuugGCGCACAGc -3' miRNA: 3'- cugCGGCu---CGUGGUCGua-------------CGCGUGUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 224551 | 0.67 | 0.801841 |
Target: 5'- cGGCGCCcAGCaggaACCAGCG-GCaGCGCAGc -3' miRNA: 3'- -CUGCGGcUCG----UGGUCGUaCG-CGUGUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 224319 | 0.67 | 0.822355 |
Target: 5'- --aGCCGAGCGCCgcagcccgugcucguAGCGUcGcCGCACGu -3' miRNA: 3'- cugCGGCUCGUGG---------------UCGUA-C-GCGUGUu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 223224 | 0.66 | 0.873567 |
Target: 5'- uGACGCagguaGAGCcCCugcagcagcgagAGCGUGCGCugGu -3' miRNA: 3'- -CUGCGg----CUCGuGG------------UCGUACGCGugUu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 222626 | 0.67 | 0.835507 |
Target: 5'- --gGCCGAcaugugaucgaaGgGCCGGCAgGCGCGCAGc -3' miRNA: 3'- cugCGGCU------------CgUGGUCGUaCGCGUGUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 222489 | 0.66 | 0.873567 |
Target: 5'- cACGCCGAacugguccaacaGCACCAcGCcgcUGgGCACGAa -3' miRNA: 3'- cUGCGGCU------------CGUGGU-CGu--ACgCGUGUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 222251 | 0.68 | 0.784096 |
Target: 5'- --aGUCGAGCGcgcucuCCAGC-UGCGCGCGc -3' miRNA: 3'- cugCGGCUCGU------GGUCGuACGCGUGUu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 220060 | 0.69 | 0.678985 |
Target: 5'- aACGCCaggaaggacAGCACCAGCAgcGCGUACAc -3' miRNA: 3'- cUGCGGc--------UCGUGGUCGUa-CGCGUGUu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 219147 | 0.66 | 0.866346 |
Target: 5'- aGACagGCaGGGUACCAGCAgGCGcCGCAGc -3' miRNA: 3'- -CUG--CGgCUCGUGGUCGUaCGC-GUGUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 218462 | 0.66 | 0.851307 |
Target: 5'- --gGCCG-GCACCAcGcCGUGgGCGCAGu -3' miRNA: 3'- cugCGGCuCGUGGU-C-GUACgCGUGUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 217851 | 0.66 | 0.858924 |
Target: 5'- aGGCGCaGAGCcCCAGCAgcacgacGUGCACc- -3' miRNA: 3'- -CUGCGgCUCGuGGUCGUa------CGCGUGuu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 217407 | 0.66 | 0.858925 |
Target: 5'- --gGCUGAGCGgCGGCAUGaagccggugcaGCACAGg -3' miRNA: 3'- cugCGGCUCGUgGUCGUACg----------CGUGUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 216195 | 0.76 | 0.347197 |
Target: 5'- aGGCGCUGAGCACCGGCGcgggguccuccUG-GCACAc -3' miRNA: 3'- -CUGCGGCUCGUGGUCGU-----------ACgCGUGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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