miRNA display CGI


Results 41 - 60 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14235 5' -58.3 NC_003521.1 + 186296 0.71 0.599049
Target:  5'- -cCGCCGGGCcCCAGCG-GCGCcguGCAGa -3'
miRNA:   3'- cuGCGGCUCGuGGUCGUaCGCG---UGUU- -5'
14235 5' -58.3 NC_003521.1 + 185106 0.67 0.801841
Target:  5'- aGGCGCUGcGCGCCGaCAUGCuggaGCACGGg -3'
miRNA:   3'- -CUGCGGCuCGUGGUcGUACG----CGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 181841 0.68 0.747104
Target:  5'- cACGCCGAcCACCAGUgccugacgGCGCGCu- -3'
miRNA:   3'- cUGCGGCUcGUGGUCGua------CGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 181330 0.67 0.827338
Target:  5'- gGGCGCCGucugguucuguAGCugCAGCGUGauuguCGCGCc- -3'
miRNA:   3'- -CUGCGGC-----------UCGugGUCGUAC-----GCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 179858 0.71 0.619036
Target:  5'- --gGUCGGGCAUCAGgAUGCgGCACAGc -3'
miRNA:   3'- cugCGGCUCGUGGUCgUACG-CGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 179499 0.66 0.866346
Target:  5'- aGCGCCGGGgAacacgugucCCAGUAgucccacggGCGCGCAAa -3'
miRNA:   3'- cUGCGGCUCgU---------GGUCGUa--------CGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 175635 0.68 0.775023
Target:  5'- cAUGCCGGGCA-CGGCGagagcguaucguUGCGCACu- -3'
miRNA:   3'- cUGCGGCUCGUgGUCGU------------ACGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 170552 0.69 0.708568
Target:  5'- cGGCGCCGAccuGCGCCuGCccGUGCuGCACc- -3'
miRNA:   3'- -CUGCGGCU---CGUGGuCG--UACG-CGUGuu -5'
14235 5' -58.3 NC_003521.1 + 170149 0.66 0.880579
Target:  5'- aGACGCCGucgguuuuccAGCAgCAGC-UGCaGCACc- -3'
miRNA:   3'- -CUGCGGC----------UCGUgGUCGuACG-CGUGuu -5'
14235 5' -58.3 NC_003521.1 + 169356 0.69 0.678985
Target:  5'- cGCGUCGGcGCGCCAGCAUGUaaGuCACGu -3'
miRNA:   3'- cUGCGGCU-CGUGGUCGUACG--C-GUGUu -5'
14235 5' -58.3 NC_003521.1 + 168829 0.66 0.866346
Target:  5'- --aGCUGGGCcCCAGCGagcUGCGCGuCAc -3'
miRNA:   3'- cugCGGCUCGuGGUCGU---ACGCGU-GUu -5'
14235 5' -58.3 NC_003521.1 + 168451 0.71 0.56926
Target:  5'- gGACGCCGAGUACgGGCuggGCGagGCGGa -3'
miRNA:   3'- -CUGCGGCUCGUGgUCGua-CGCg-UGUU- -5'
14235 5' -58.3 NC_003521.1 + 167066 0.66 0.866346
Target:  5'- uGACGCCG-GUGCCGGCccacAUGUagaagagcagcuGCACGAa -3'
miRNA:   3'- -CUGCGGCuCGUGGUCG----UACG------------CGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 166749 0.66 0.858924
Target:  5'- --gGCC-AGCACCAGCuggAUGCGguCGAc -3'
miRNA:   3'- cugCGGcUCGUGGUCG---UACGCguGUU- -5'
14235 5' -58.3 NC_003521.1 + 166645 0.73 0.501488
Target:  5'- cGCGCCGGGCGCC-GCG-GCGCAg-- -3'
miRNA:   3'- cUGCGGCUCGUGGuCGUaCGCGUguu -5'
14235 5' -58.3 NC_003521.1 + 166317 0.68 0.743311
Target:  5'- uGAUGCCGcucuGCuCCAGCAgcugcgcgaagucGCGCACAAa -3'
miRNA:   3'- -CUGCGGCu---CGuGGUCGUa------------CGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 163832 0.68 0.784096
Target:  5'- uGAUGCCGuGCcugcccaucgccGCCAGCAUcacGCGCAUc- -3'
miRNA:   3'- -CUGCGGCuCG------------UGGUCGUA---CGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 161643 0.67 0.818999
Target:  5'- cGGCGCCaccGAGCACggcuaCAGCAucUGCGuCACGu -3'
miRNA:   3'- -CUGCGG---CUCGUG-----GUCGU--ACGC-GUGUu -5'
14235 5' -58.3 NC_003521.1 + 161062 0.66 0.858924
Target:  5'- aACGCCGGuccuCACCGGCccgGCGCugAu -3'
miRNA:   3'- cUGCGGCUc---GUGGUCGua-CGCGugUu -5'
14235 5' -58.3 NC_003521.1 + 155565 0.68 0.747104
Target:  5'- cGCGCgGAGCggguaGCCAGUuauuUGCGCGCc- -3'
miRNA:   3'- cUGCGgCUCG-----UGGUCGu---ACGCGUGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.