Results 1 - 20 of 200 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14235 | 5' | -58.3 | NC_003521.1 | + | 45903 | 0.94 | 0.023531 |
Target: 5'- cGACG-CGAGCACCAGCAUGCGCACAAa -3' miRNA: 3'- -CUGCgGCUCGUGGUCGUACGCGUGUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 44363 | 0.7 | 0.629047 |
Target: 5'- --gGCCGAGUGCCAGCGgagguuCGCGCGg -3' miRNA: 3'- cugCGGCUCGUGGUCGUac----GCGUGUu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 104736 | 0.69 | 0.678985 |
Target: 5'- uGACGCacacCGAGCccuCCAGCGUggagaugaGCGCGCAGc -3' miRNA: 3'- -CUGCG----GCUCGu--GGUCGUA--------CGCGUGUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 100590 | 0.66 | 0.880579 |
Target: 5'- cGACGCgGAGggagcCGCCAuCAUGCuGCACGg -3' miRNA: 3'- -CUGCGgCUC-----GUGGUcGUACG-CGUGUu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 113266 | 0.73 | 0.4726 |
Target: 5'- uGAuCGCCGAGCACCuggccgacGGCGUGCugccgccGCACAu -3' miRNA: 3'- -CU-GCGGCUCGUGG--------UCGUACG-------CGUGUu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 166645 | 0.73 | 0.501488 |
Target: 5'- cGCGCCGGGCGCC-GCG-GCGCAg-- -3' miRNA: 3'- cUGCGGCUCGUGGuCGUaCGCGUguu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 135018 | 0.72 | 0.539851 |
Target: 5'- uGGCuGCCGGGCACCguGGCcUGCGuCACGGu -3' miRNA: 3'- -CUG-CGGCUCGUGG--UCGuACGC-GUGUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 18077 | 0.72 | 0.539851 |
Target: 5'- cGugGCCGuAGC-CCAGacgGCGCGCGAg -3' miRNA: 3'- -CugCGGC-UCGuGGUCguaCGCGUGUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 14677 | 0.71 | 0.566299 |
Target: 5'- cGACGCCGAGUGCCgccgcuggugguggGGCAuccgcgccaaccUGUGCACGc -3' miRNA: 3'- -CUGCGGCUCGUGG--------------UCGU------------ACGCGUGUu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 179858 | 0.71 | 0.619036 |
Target: 5'- --gGUCGGGCAUCAGgAUGCgGCACAGc -3' miRNA: 3'- cugCGGCUCGUGGUCgUACG-CGUGUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 110806 | 0.71 | 0.579156 |
Target: 5'- uGACGCUGAaaGCCAGCGgccguUGCGCGCc- -3' miRNA: 3'- -CUGCGGCUcgUGGUCGU-----ACGCGUGuu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 88010 | 0.72 | 0.549602 |
Target: 5'- cGACGCCGAGCuguaccaccuGCCGGUgaccgaggcgGUGCGCAa-- -3' miRNA: 3'- -CUGCGGCUCG----------UGGUCG----------UACGCGUguu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 128462 | 0.76 | 0.324996 |
Target: 5'- aGACGCCGcAGcCGCC-GCGUGCGUACGGu -3' miRNA: 3'- -CUGCGGC-UC-GUGGuCGUACGCGUGUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 186296 | 0.71 | 0.599049 |
Target: 5'- -cCGCCGGGCcCCAGCG-GCGCcguGCAGa -3' miRNA: 3'- cuGCGGCUCGuGGUCGUaCGCG---UGUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 190983 | 0.75 | 0.362589 |
Target: 5'- cGAgGCCGAGCGgCAGCAgGCGCAgGu -3' miRNA: 3'- -CUgCGGCUCGUgGUCGUaCGCGUgUu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 86237 | 0.72 | 0.549602 |
Target: 5'- uGCGCCGAGCGCguGCGguugagaaucGCGCugAGg -3' miRNA: 3'- cUGCGGCUCGUGguCGUa---------CGCGugUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 26467 | 0.71 | 0.609034 |
Target: 5'- cGugGCCuggGAGCACC-GCcUGCGCGCu- -3' miRNA: 3'- -CugCGG---CUCGUGGuCGuACGCGUGuu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 149927 | 0.7 | 0.668043 |
Target: 5'- cGACGCCGAcGCAUgCGcaguucaacgugcGCAUGCGCGCu- -3' miRNA: 3'- -CUGCGGCU-CGUG-GU-------------CGUACGCGUGuu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 209102 | 0.75 | 0.370461 |
Target: 5'- gGugGCCGcGGCGucCCAGCAcGCGCACAu -3' miRNA: 3'- -CugCGGC-UCGU--GGUCGUaCGCGUGUu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 201386 | 0.73 | 0.505273 |
Target: 5'- cGGCGCCGGGCucgGCCGGCAgcggcauuuucucgGCGCcCAAa -3' miRNA: 3'- -CUGCGGCUCG---UGGUCGUa-------------CGCGuGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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