miRNA display CGI


Results 21 - 40 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14235 5' -58.3 NC_003521.1 + 22431 0.69 0.698758
Target:  5'- cGugGCCGAGUACC-GCccGCGCuuCAc -3'
miRNA:   3'- -CugCGGCUCGUGGuCGuaCGCGu-GUu -5'
14235 5' -58.3 NC_003521.1 + 104736 0.69 0.678985
Target:  5'- uGACGCacacCGAGCccuCCAGCGUggagaugaGCGCGCAGc -3'
miRNA:   3'- -CUGCG----GCUCGu--GGUCGUA--------CGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 88010 0.72 0.549602
Target:  5'- cGACGCCGAGCuguaccaccuGCCGGUgaccgaggcgGUGCGCAa-- -3'
miRNA:   3'- -CUGCGGCUCG----------UGGUCG----------UACGCGUguu -5'
14235 5' -58.3 NC_003521.1 + 209102 0.75 0.370461
Target:  5'- gGugGCCGcGGCGucCCAGCAcGCGCACAu -3'
miRNA:   3'- -CugCGGC-UCGU--GGUCGUaCGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 39562 0.68 0.774108
Target:  5'- cGACGCCGgccaucuGGCugCgcGGCGugaUGCGCGCGu -3'
miRNA:   3'- -CUGCGGC-------UCGugG--UCGU---ACGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 88664 0.69 0.731844
Target:  5'- cGAUGCUGAGCAUgAGCGaguaccgcgccgaacUGCuGCACGGg -3'
miRNA:   3'- -CUGCGGCUCGUGgUCGU---------------ACG-CGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 44363 0.7 0.629047
Target:  5'- --gGCCGAGUGCCAGCGgagguuCGCGCGg -3'
miRNA:   3'- cugCGGCUCGUGGUCGUac----GCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 190983 0.75 0.362589
Target:  5'- cGAgGCCGAGCGgCAGCAgGCGCAgGu -3'
miRNA:   3'- -CUgCGGCUCGUgGUCGUaCGCGUgUu -5'
14235 5' -58.3 NC_003521.1 + 212289 0.69 0.727995
Target:  5'- --gGCCaGGGCgaagGCCGGCAUGgGCACGc -3'
miRNA:   3'- cugCGG-CUCG----UGGUCGUACgCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 128462 0.76 0.324996
Target:  5'- aGACGCCGcAGcCGCC-GCGUGCGUACGGu -3'
miRNA:   3'- -CUGCGGC-UC-GUGGuCGUACGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 149927 0.7 0.668043
Target:  5'- cGACGCCGAcGCAUgCGcaguucaacgugcGCAUGCGCGCu- -3'
miRNA:   3'- -CUGCGGCU-CGUG-GU-------------CGUACGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 15318 0.69 0.708568
Target:  5'- cGGCGCCGAGCgggugAUCAGC--GCGCugGu -3'
miRNA:   3'- -CUGCGGCUCG-----UGGUCGuaCGCGugUu -5'
14235 5' -58.3 NC_003521.1 + 186296 0.71 0.599049
Target:  5'- -cCGCCGGGCcCCAGCG-GCGCcguGCAGa -3'
miRNA:   3'- cuGCGGCUCGuGGUCGUaCGCG---UGUU- -5'
14235 5' -58.3 NC_003521.1 + 14677 0.71 0.566299
Target:  5'- cGACGCCGAGUGCCgccgcuggugguggGGCAuccgcgccaaccUGUGCACGc -3'
miRNA:   3'- -CUGCGGCUCGUGG--------------UCGU------------ACGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 135018 0.72 0.539851
Target:  5'- uGGCuGCCGGGCACCguGGCcUGCGuCACGGu -3'
miRNA:   3'- -CUG-CGGCUCGUGG--UCGuACGC-GUGUU- -5'
14235 5' -58.3 NC_003521.1 + 113266 0.73 0.4726
Target:  5'- uGAuCGCCGAGCACCuggccgacGGCGUGCugccgccGCACAu -3'
miRNA:   3'- -CU-GCGGCUCGUGG--------UCGUACG-------CGUGUu -5'
14235 5' -58.3 NC_003521.1 + 14924 0.68 0.784096
Target:  5'- cGGCGCuuCGAGCGCgAGCGgcaGCGC-CAGa -3'
miRNA:   3'- -CUGCG--GCUCGUGgUCGUa--CGCGuGUU- -5'
14235 5' -58.3 NC_003521.1 + 102792 0.68 0.775023
Target:  5'- cACGCCccguGCGCCGGCA-GCGaCGCAc -3'
miRNA:   3'- cUGCGGcu--CGUGGUCGUaCGC-GUGUu -5'
14235 5' -58.3 NC_003521.1 + 102828 0.68 0.765827
Target:  5'- cGACGCCGAGaucgACCuGCGcGCGgACAc -3'
miRNA:   3'- -CUGCGGCUCg---UGGuCGUaCGCgUGUu -5'
14235 5' -58.3 NC_003521.1 + 166317 0.68 0.743311
Target:  5'- uGAUGCCGcucuGCuCCAGCAgcugcgcgaagucGCGCACAAa -3'
miRNA:   3'- -CUGCGGCu---CGuGGUCGUa------------CGCGUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.