miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14237 3' -55 NC_003521.1 + 29476 0.65 0.977294
Target:  5'- gCUGCUGCGggACCccaaccACUcgcgcccgcGGGACCGCc- -3'
miRNA:   3'- -GACGAUGCa-UGGa-----UGA---------CCCUGGCGug -5'
14237 3' -55 NC_003521.1 + 155706 0.65 0.977294
Target:  5'- -gGCUACGUGCCgcccgccGCUGccGCCGC-Cg -3'
miRNA:   3'- gaCGAUGCAUGGa------UGACccUGGCGuG- -5'
14237 3' -55 NC_003521.1 + 66686 0.65 0.977294
Target:  5'- uUGCUcaGUACCUcCUGGG-CUGCGa -3'
miRNA:   3'- gACGAugCAUGGAuGACCCuGGCGUg -5'
14237 3' -55 NC_003521.1 + 234759 0.65 0.977059
Target:  5'- -gGCUGgCGUGaucacgcCCUGC-GGGGCCGCu- -3'
miRNA:   3'- gaCGAU-GCAU-------GGAUGaCCCUGGCGug -5'
14237 3' -55 NC_003521.1 + 141097 0.66 0.974856
Target:  5'- cCUGUgGC-UGCuCUACUGcGGcCCGCGCa -3'
miRNA:   3'- -GACGaUGcAUG-GAUGAC-CCuGGCGUG- -5'
14237 3' -55 NC_003521.1 + 194075 0.66 0.974856
Target:  5'- gCUGCUACcaccAgCUGCUgGGGGCCcugggGCACg -3'
miRNA:   3'- -GACGAUGca--UgGAUGA-CCCUGG-----CGUG- -5'
14237 3' -55 NC_003521.1 + 98175 0.66 0.974856
Target:  5'- -cGCUGCGccgACC-GCUGaGGCCGCGg -3'
miRNA:   3'- gaCGAUGCa--UGGaUGACcCUGGCGUg -5'
14237 3' -55 NC_003521.1 + 86964 0.66 0.974856
Target:  5'- uCUGgaGCaGUACCUGCUGGucugGAgCGCGu -3'
miRNA:   3'- -GACgaUG-CAUGGAUGACC----CUgGCGUg -5'
14237 3' -55 NC_003521.1 + 85573 0.66 0.974856
Target:  5'- -gGUUGCGgauggaaCUGg-GGGGCCGCACg -3'
miRNA:   3'- gaCGAUGCaug----GAUgaCCCUGGCGUG- -5'
14237 3' -55 NC_003521.1 + 207557 0.66 0.972232
Target:  5'- gCUGCUgcacgaucGCGccgGCCUGCUGGcGugUGC-Ca -3'
miRNA:   3'- -GACGA--------UGCa--UGGAUGACC-CugGCGuG- -5'
14237 3' -55 NC_003521.1 + 124230 0.66 0.972232
Target:  5'- -cGCaGCG-ACUUGCaggGaGGGCCGCGCg -3'
miRNA:   3'- gaCGaUGCaUGGAUGa--C-CCUGGCGUG- -5'
14237 3' -55 NC_003521.1 + 121127 0.66 0.969417
Target:  5'- -cGCU--GUACUg---GGGGCCGCGCa -3'
miRNA:   3'- gaCGAugCAUGGaugaCCCUGGCGUG- -5'
14237 3' -55 NC_003521.1 + 152357 0.66 0.969417
Target:  5'- gCUGCUcUGggGCCgGCcGGGGCgGCGCg -3'
miRNA:   3'- -GACGAuGCa-UGGaUGaCCCUGgCGUG- -5'
14237 3' -55 NC_003521.1 + 112569 0.66 0.969417
Target:  5'- gCUGCccaccACGgccUACCUGCUGaaccgcGACCGCGCc -3'
miRNA:   3'- -GACGa----UGC---AUGGAUGACc-----CUGGCGUG- -5'
14237 3' -55 NC_003521.1 + 12753 0.66 0.969417
Target:  5'- -cGCcucggACGUGa--GCUGGGACCcGCGCg -3'
miRNA:   3'- gaCGa----UGCAUggaUGACCCUGG-CGUG- -5'
14237 3' -55 NC_003521.1 + 18627 0.66 0.969417
Target:  5'- ----aAgGUGCCUaauaacaacgugGCgUGGGGCCGCACg -3'
miRNA:   3'- gacgaUgCAUGGA------------UG-ACCCUGGCGUG- -5'
14237 3' -55 NC_003521.1 + 114628 0.66 0.969417
Target:  5'- ---gUGCGUgGCCUACgugaaccGGGugCGCACc -3'
miRNA:   3'- gacgAUGCA-UGGAUGa------CCCugGCGUG- -5'
14237 3' -55 NC_003521.1 + 13715 0.66 0.969417
Target:  5'- -cGCUGC--GCCaggGCUGGGaACCGCuCa -3'
miRNA:   3'- gaCGAUGcaUGGa--UGACCC-UGGCGuG- -5'
14237 3' -55 NC_003521.1 + 22966 0.66 0.966403
Target:  5'- gUGCacguCGUG-CUGCUGGGGCUcuGCGCc -3'
miRNA:   3'- gACGau--GCAUgGAUGACCCUGG--CGUG- -5'
14237 3' -55 NC_003521.1 + 27249 0.66 0.963186
Target:  5'- gCUGCUACGUgGCgCUGCUGucGGuCaGCACg -3'
miRNA:   3'- -GACGAUGCA-UG-GAUGAC--CCuGgCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.