miRNA display CGI


Results 1 - 20 of 62 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14239 3' -55 NC_003521.1 + 88456 0.65 0.984626
Target:  5'- gUCCGccuCGGCGUCG--GGCUGCaGCGa -3'
miRNA:   3'- gAGGCc--GCUGCAGCuaCUGACGaUGC- -5'
14239 3' -55 NC_003521.1 + 123147 0.65 0.984626
Target:  5'- --aCGGUGAUGaUGGUGguGCUGCUGCu -3'
miRNA:   3'- gagGCCGCUGCaGCUAC--UGACGAUGc -5'
14239 3' -55 NC_003521.1 + 19882 0.66 0.982826
Target:  5'- --aCGGCcGCGUCGGcgcUGAucCUGCUGCu -3'
miRNA:   3'- gagGCCGcUGCAGCU---ACU--GACGAUGc -5'
14239 3' -55 NC_003521.1 + 61791 0.66 0.980872
Target:  5'- gCUCCGGCGugGaugCGGaaaaGAC-GUUGCGu -3'
miRNA:   3'- -GAGGCCGCugCa--GCUa---CUGaCGAUGC- -5'
14239 3' -55 NC_003521.1 + 6489 0.66 0.980872
Target:  5'- gUCCGGCaGCGgaggCGGUGACgGCa--- -3'
miRNA:   3'- gAGGCCGcUGCa---GCUACUGaCGaugc -5'
14239 3' -55 NC_003521.1 + 209085 0.66 0.980872
Target:  5'- gUCgaGGCGGCGgaggCGGUGGCcGCgGCGu -3'
miRNA:   3'- gAGg-CCGCUGCa---GCUACUGaCGaUGC- -5'
14239 3' -55 NC_003521.1 + 199502 0.66 0.980872
Target:  5'- -aUCGGCGGCGaUGAgcgcGACUGUgGCGa -3'
miRNA:   3'- gaGGCCGCUGCaGCUa---CUGACGaUGC- -5'
14239 3' -55 NC_003521.1 + 177510 0.66 0.980462
Target:  5'- uCUCCaGGCacgagagGugGUUGAUGgcguggaucagcaGCUGCUGCa -3'
miRNA:   3'- -GAGG-CCG-------CugCAGCUAC-------------UGACGAUGc -5'
14239 3' -55 NC_003521.1 + 89965 0.66 0.979622
Target:  5'- uCUCUGGCGGCcguUCGGgguucaaccggcgggUGGC-GCUGCGg -3'
miRNA:   3'- -GAGGCCGCUGc--AGCU---------------ACUGaCGAUGC- -5'
14239 3' -55 NC_003521.1 + 235304 0.66 0.978756
Target:  5'- -aCUGGCGACGacaGAUgcGACgGCUACa -3'
miRNA:   3'- gaGGCCGCUGCag-CUA--CUGaCGAUGc -5'
14239 3' -55 NC_003521.1 + 79634 0.66 0.978756
Target:  5'- --gCGGCGccucgGCGUCGucuGCUGCUGCa -3'
miRNA:   3'- gagGCCGC-----UGCAGCuacUGACGAUGc -5'
14239 3' -55 NC_003521.1 + 201547 0.66 0.978756
Target:  5'- -gCCGGCGACGUgGcgcGGCUGUauCGg -3'
miRNA:   3'- gaGGCCGCUGCAgCua-CUGACGauGC- -5'
14239 3' -55 NC_003521.1 + 1319 0.66 0.978756
Target:  5'- -gCCGGCGACGUgGcgcGGCUGUauCGg -3'
miRNA:   3'- gaGGCCGCUGCAgCua-CUGACGauGC- -5'
14239 3' -55 NC_003521.1 + 122611 0.66 0.976472
Target:  5'- -cCCGGCGACGgCGgcGGCcGCgcgcucgGCGg -3'
miRNA:   3'- gaGGCCGCUGCaGCuaCUGaCGa------UGC- -5'
14239 3' -55 NC_003521.1 + 39316 0.66 0.976472
Target:  5'- aUUCGuCGGCGUCGcgGGCgGCUAgGg -3'
miRNA:   3'- gAGGCcGCUGCAGCuaCUGaCGAUgC- -5'
14239 3' -55 NC_003521.1 + 239543 0.66 0.976472
Target:  5'- aUUCGuCGGCGUCGcgGGCgGCUAgGg -3'
miRNA:   3'- gAGGCcGCUGCAGCuaCUGaCGAUgC- -5'
14239 3' -55 NC_003521.1 + 17121 0.66 0.974012
Target:  5'- -cCCGGCGAgguCGUCGAUc-CUGCcgGCGc -3'
miRNA:   3'- gaGGCCGCU---GCAGCUAcuGACGa-UGC- -5'
14239 3' -55 NC_003521.1 + 76494 0.67 0.971371
Target:  5'- -gCCGG-GACG-CGuggcggcuGUGACUGCUGCu -3'
miRNA:   3'- gaGGCCgCUGCaGC--------UACUGACGAUGc -5'
14239 3' -55 NC_003521.1 + 39453 0.67 0.971371
Target:  5'- -cCCGGCGccgagggccGCGUCGAagGAUUGCggaucgGCGc -3'
miRNA:   3'- gaGGCCGC---------UGCAGCUa-CUGACGa-----UGC- -5'
14239 3' -55 NC_003521.1 + 111813 0.67 0.971371
Target:  5'- cCUCUGGCGGCGccagCGAgauCUGgaGCGu -3'
miRNA:   3'- -GAGGCCGCUGCa---GCUacuGACgaUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.