miRNA display CGI


Results 1 - 20 of 346 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14239 5' -68.1 NC_003521.1 + 44051 1.09 0.000596
Target:  5'- uACCGCGCCCGCGGUCGCGCCGGCCGGg -3'
miRNA:   3'- -UGGCGCGGGCGCCAGCGCGGCCGGCC- -5'
14239 5' -68.1 NC_003521.1 + 197860 0.73 0.21486
Target:  5'- --gGCGCCgGCgGGUCGCGCUcGCUGGg -3'
miRNA:   3'- uggCGCGGgCG-CCAGCGCGGcCGGCC- -5'
14239 5' -68.1 NC_003521.1 + 80043 0.73 0.219578
Target:  5'- cCCGCGCCCGCGuG-C-CGCCGGCgGc -3'
miRNA:   3'- uGGCGCGGGCGC-CaGcGCGGCCGgCc -5'
14239 5' -68.1 NC_003521.1 + 200336 0.66 0.554297
Target:  5'- cGCUGCgGCgCCGUGG-CGCGCCG--CGGa -3'
miRNA:   3'- -UGGCG-CG-GGCGCCaGCGCGGCcgGCC- -5'
14239 5' -68.1 NC_003521.1 + 222106 0.76 0.124531
Target:  5'- cGCCGcCGCCaGCGGcagccacagccggaUCGCGCCGGCCa- -3'
miRNA:   3'- -UGGC-GCGGgCGCC--------------AGCGCGGCCGGcc -5'
14239 5' -68.1 NC_003521.1 + 17001 0.75 0.147155
Target:  5'- aGCagGCGCCCGCGGUgGCGgCGGCgcaGGc -3'
miRNA:   3'- -UGg-CGCGGGCGCCAgCGCgGCCGg--CC- -5'
14239 5' -68.1 NC_003521.1 + 23074 0.75 0.164751
Target:  5'- cCCGCGUCUGUGGUgucUGCGUCcguGGCCGGg -3'
miRNA:   3'- uGGCGCGGGCGCCA---GCGCGG---CCGGCC- -5'
14239 5' -68.1 NC_003521.1 + 104043 0.74 0.16849
Target:  5'- gACCGUgaGCCCGCuGUCGCGCagguaGGCCa- -3'
miRNA:   3'- -UGGCG--CGGGCGcCAGCGCGg----CCGGcc -5'
14239 5' -68.1 NC_003521.1 + 181199 0.74 0.188344
Target:  5'- cGCCuGCGagCCGCGGUCGcCGCCggGGCCGc -3'
miRNA:   3'- -UGG-CGCg-GGCGCCAGC-GCGG--CCGGCc -5'
14239 5' -68.1 NC_003521.1 + 148820 0.73 0.210228
Target:  5'- cGCCGCGCCuCGCcGcucccgcuccguUCGCGCCGGaUCGGc -3'
miRNA:   3'- -UGGCGCGG-GCGcC------------AGCGCGGCC-GGCC- -5'
14239 5' -68.1 NC_003521.1 + 110342 0.73 0.198587
Target:  5'- gGCCGCGCUCGCGGUguagcugggccagcaCGCGaccgaaaaacUCGGCCGu -3'
miRNA:   3'- -UGGCGCGGGCGCCA---------------GCGC----------GGCCGGCc -5'
14239 5' -68.1 NC_003521.1 + 240620 0.74 0.172305
Target:  5'- cGCgGCgGCgUGCGG-CGgGCCGGCCGGu -3'
miRNA:   3'- -UGgCG-CGgGCGCCaGCgCGGCCGGCC- -5'
14239 5' -68.1 NC_003521.1 + 174204 0.78 0.092707
Target:  5'- -aCGCGCCCacguuGgGGUCGCGCgGGUCGGg -3'
miRNA:   3'- ugGCGCGGG-----CgCCAGCGCGgCCGGCC- -5'
14239 5' -68.1 NC_003521.1 + 208093 0.73 0.201222
Target:  5'- uCCGCGCCCGCuGGUgGCGUC-GCCa- -3'
miRNA:   3'- uGGCGCGGGCG-CCAgCGCGGcCGGcc -5'
14239 5' -68.1 NC_003521.1 + 198754 0.77 0.109155
Target:  5'- uGCCGUGCUCGCuGGUCGCGCCGcucGUgGGc -3'
miRNA:   3'- -UGGCGCGGGCG-CCAGCGCGGC---CGgCC- -5'
14239 5' -68.1 NC_003521.1 + 71 0.74 0.172305
Target:  5'- cGCgGCgGCgUGCGG-CGgGCCGGCCGGu -3'
miRNA:   3'- -UGgCG-CGgGCGCCaGCgCGGCCGGCC- -5'
14239 5' -68.1 NC_003521.1 + 156692 0.73 0.210228
Target:  5'- uUCGCGCUCGgGGaaaagGUGCUGGCCGGg -3'
miRNA:   3'- uGGCGCGGGCgCCag---CGCGGCCGGCC- -5'
14239 5' -68.1 NC_003521.1 + 76385 0.73 0.21486
Target:  5'- gGCCGCGgCCGCGGUgGCGCugcuagcaccagCGGCgGu -3'
miRNA:   3'- -UGGCGCgGGCGCCAgCGCG------------GCCGgCc -5'
14239 5' -68.1 NC_003521.1 + 172299 0.77 0.111718
Target:  5'- uGCCGcCGUCCGguguCGGUgGCGCCaGGCCGGu -3'
miRNA:   3'- -UGGC-GCGGGC----GCCAgCGCGG-CCGGCC- -5'
14239 5' -68.1 NC_003521.1 + 14757 0.75 0.150531
Target:  5'- gGCCGCGgCCGgGG-CGCGCCuucguGGCCGa -3'
miRNA:   3'- -UGGCGCgGGCgCCaGCGCGG-----CCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.