miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14252 5' -58.8 NC_003521.1 + 27969 0.66 0.910601
Target:  5'- aCG-CCAGgcgGCGcucaCgGCCACGGCGg -3'
miRNA:   3'- -GCaGGUCa--CGCacuaGgCGGUGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 126069 0.66 0.910601
Target:  5'- uGUCCAGcaGCuGUGG-CCGCgccaccccCACGGCGu -3'
miRNA:   3'- gCAGGUCa-CG-CACUaGGCG--------GUGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 52787 0.66 0.910033
Target:  5'- uGUCCAGgcgGCGgugcggcuccaccUGGaCCGCCuucACGGUGa -3'
miRNA:   3'- gCAGGUCa--CGC-------------ACUaGGCGG---UGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 139415 0.66 0.907161
Target:  5'- -uUCCAGccgcacgggcucuccUGCGUGG-CCGUCaaGCGGCGc -3'
miRNA:   3'- gcAGGUC---------------ACGCACUaGGCGG--UGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 112798 0.66 0.904826
Target:  5'- gCGUgCGGcGCGaGGUgCCGCgCACGGUGa -3'
miRNA:   3'- -GCAgGUCaCGCaCUA-GGCG-GUGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 172103 0.66 0.904826
Target:  5'- aGUCC-GUGCG-GG-CgGCCgACGGCGc -3'
miRNA:   3'- gCAGGuCACGCaCUaGgCGG-UGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 16866 0.66 0.898844
Target:  5'- aCGUCUAcgacGUGCGU--UCC-CCGCGGCc -3'
miRNA:   3'- -GCAGGU----CACGCAcuAGGcGGUGCCGc -5'
14252 5' -58.8 NC_003521.1 + 126378 0.66 0.898844
Target:  5'- aCGUgUCGGUGCGcacggCCGUCAgGGCGa -3'
miRNA:   3'- -GCA-GGUCACGCacua-GGCGGUgCCGC- -5'
14252 5' -58.8 NC_003521.1 + 17353 0.66 0.898843
Target:  5'- --cCCGG-GcCGUGAcgCCGgCGCGGCGg -3'
miRNA:   3'- gcaGGUCaC-GCACUa-GGCgGUGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 76554 0.66 0.898843
Target:  5'- uGUCCAGgaGCGgcGGUCCGCgCcucCGGCa -3'
miRNA:   3'- gCAGGUCa-CGCa-CUAGGCG-Gu--GCCGc -5'
14252 5' -58.8 NC_003521.1 + 70744 0.66 0.892654
Target:  5'- uCGUCCAGcUGCag---CgCGCCGCGGCc -3'
miRNA:   3'- -GCAGGUC-ACGcacuaG-GCGGUGCCGc -5'
14252 5' -58.8 NC_003521.1 + 196658 0.66 0.892654
Target:  5'- aCGUCCagcugGGUGCGcaGGUCCaccaggauGUCGCGGCu -3'
miRNA:   3'- -GCAGG-----UCACGCa-CUAGG--------CGGUGCCGc -5'
14252 5' -58.8 NC_003521.1 + 56778 0.66 0.892654
Target:  5'- cCGUCCAgcugcuGUGCGcGAgggCuCGCgACGGCa -3'
miRNA:   3'- -GCAGGU------CACGCaCUa--G-GCGgUGCCGc -5'
14252 5' -58.8 NC_003521.1 + 180097 0.66 0.890757
Target:  5'- cCGUCCAGggagggcagcgGCGUGGUgcgacccgcgCCGCCcccgggucccccgcGCGGCc -3'
miRNA:   3'- -GCAGGUCa----------CGCACUA----------GGCGG--------------UGCCGc -5'
14252 5' -58.8 NC_003521.1 + 149171 0.66 0.886261
Target:  5'- uCGUCCGucucgGCGcGcgUCGCCAcCGGCGg -3'
miRNA:   3'- -GCAGGUca---CGCaCuaGGCGGU-GCCGC- -5'
14252 5' -58.8 NC_003521.1 + 58384 0.66 0.886261
Target:  5'- --cCCcGUGCacaggggGAUCUGCCGCGGCc -3'
miRNA:   3'- gcaGGuCACGca-----CUAGGCGGUGCCGc -5'
14252 5' -58.8 NC_003521.1 + 122102 0.66 0.886261
Target:  5'- gGUCUcGUGCGgcugcagcgGcGUCuCGCCGCGGCu -3'
miRNA:   3'- gCAGGuCACGCa--------C-UAG-GCGGUGCCGc -5'
14252 5' -58.8 NC_003521.1 + 105574 0.66 0.886261
Target:  5'- gCGUCCGccGcCGUGucgucgCCGCCGcCGGCGc -3'
miRNA:   3'- -GCAGGUcaC-GCACua----GGCGGU-GCCGC- -5'
14252 5' -58.8 NC_003521.1 + 125999 0.66 0.886261
Target:  5'- uGUCC-GUGCaccGUGG-CCGCCGCGuuGCGc -3'
miRNA:   3'- gCAGGuCACG---CACUaGGCGGUGC--CGC- -5'
14252 5' -58.8 NC_003521.1 + 138014 0.67 0.879668
Target:  5'- gCGUCgAGgugcGCGUGcgUCGCUGcCGGCGc -3'
miRNA:   3'- -GCAGgUCa---CGCACuaGGCGGU-GCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.