miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14258 5' -56.9 NC_003521.1 + 46373 0.66 0.945954
Target:  5'- cACGAcGCGGCUgugaggGGCgcggGGUGCGUgggGCg -3'
miRNA:   3'- -UGCUcUGCCGAga----CCG----CCACGCAa--UG- -5'
14258 5' -56.9 NC_003521.1 + 99282 0.66 0.945954
Target:  5'- -aGAGGCGGUUCUGGCuguagaGG-GCGc--- -3'
miRNA:   3'- ugCUCUGCCGAGACCG------CCaCGCaaug -5'
14258 5' -56.9 NC_003521.1 + 218711 0.66 0.945954
Target:  5'- -gGAGACGGCggcGGCGGcggGCGa--- -3'
miRNA:   3'- ugCUCUGCCGagaCCGCCa--CGCaaug -5'
14258 5' -56.9 NC_003521.1 + 99284 0.66 0.945954
Target:  5'- gACGucggagcGAUGGCUCcguuguugUGGUGGUGCGa--- -3'
miRNA:   3'- -UGCu------CUGCCGAG--------ACCGCCACGCaaug -5'
14258 5' -56.9 NC_003521.1 + 19945 0.66 0.9416
Target:  5'- gGCGAGAucguggugaggUGGCcgggCUGGCGGUGauCGUgACc -3'
miRNA:   3'- -UGCUCU-----------GCCGa---GACCGCCAC--GCAaUG- -5'
14258 5' -56.9 NC_003521.1 + 101971 0.66 0.9416
Target:  5'- uGCGAGAUGGgguccagCaGGCGGUGCaGcUGCg -3'
miRNA:   3'- -UGCUCUGCCga-----GaCCGCCACG-CaAUG- -5'
14258 5' -56.9 NC_003521.1 + 77725 0.66 0.937025
Target:  5'- gGCGAcGGCGGC-CUcGGUGGgcgGCGUc-- -3'
miRNA:   3'- -UGCU-CUGCCGaGA-CCGCCa--CGCAaug -5'
14258 5' -56.9 NC_003521.1 + 115824 0.66 0.935609
Target:  5'- cGCGGGugGcucagcaggcgcugGCUCaGGCGG-GCGgcGCa -3'
miRNA:   3'- -UGCUCugC--------------CGAGaCCGCCaCGCaaUG- -5'
14258 5' -56.9 NC_003521.1 + 208594 0.66 0.927206
Target:  5'- uCGAGugGGaC-CUGGCcgucuGGgccGCGUUGCg -3'
miRNA:   3'- uGCUCugCC-GaGACCG-----CCa--CGCAAUG- -5'
14258 5' -56.9 NC_003521.1 + 178234 0.66 0.927206
Target:  5'- uCGuGGaGGCUCUcgcacugguaGGCGGcgGCGUUGCu -3'
miRNA:   3'- uGCuCUgCCGAGA----------CCGCCa-CGCAAUG- -5'
14258 5' -56.9 NC_003521.1 + 152373 0.66 0.925135
Target:  5'- cCGGGGCGGCgcgcccUCuacucuagucaucUGGCGGUGCcgcgccuucucgcgGUUGCa -3'
miRNA:   3'- uGCUCUGCCG------AG-------------ACCGCCACG--------------CAAUG- -5'
14258 5' -56.9 NC_003521.1 + 108289 0.66 0.921961
Target:  5'- cCGAgGGCGGUggUGGCGGUGaCGacgACg -3'
miRNA:   3'- uGCU-CUGCCGagACCGCCAC-GCaa-UG- -5'
14258 5' -56.9 NC_003521.1 + 174416 0.67 0.916493
Target:  5'- aGCGAc-UGGCUCaGGCGGUGCa---- -3'
miRNA:   3'- -UGCUcuGCCGAGaCCGCCACGcaaug -5'
14258 5' -56.9 NC_003521.1 + 135774 0.67 0.910802
Target:  5'- gGCGGuGGCGGCagUGGCGcUGCGggAg -3'
miRNA:   3'- -UGCU-CUGCCGagACCGCcACGCaaUg -5'
14258 5' -56.9 NC_003521.1 + 59629 0.67 0.910802
Target:  5'- gGCGAccGCGGCUCgcaGGCguuGGUGCGgcagACg -3'
miRNA:   3'- -UGCUc-UGCCGAGa--CCG---CCACGCaa--UG- -5'
14258 5' -56.9 NC_003521.1 + 44442 0.67 0.904889
Target:  5'- gUGAcGGCGGCUC-GGCGaUGCGagUACa -3'
miRNA:   3'- uGCU-CUGCCGAGaCCGCcACGCa-AUG- -5'
14258 5' -56.9 NC_003521.1 + 225846 0.67 0.898758
Target:  5'- ---cGGCGcGCUCgUGGUGGUGCGggcACa -3'
miRNA:   3'- ugcuCUGC-CGAG-ACCGCCACGCaa-UG- -5'
14258 5' -56.9 NC_003521.1 + 97272 0.67 0.898758
Target:  5'- aGCGAuGGCGGCUgCUgcucgucgccGGCGGcGCGcgUGCg -3'
miRNA:   3'- -UGCU-CUGCCGA-GA----------CCGCCaCGCa-AUG- -5'
14258 5' -56.9 NC_003521.1 + 177974 0.67 0.898758
Target:  5'- cUGAGGCGGggCacaccuggGGCGGUGCGgguaggGCg -3'
miRNA:   3'- uGCUCUGCCgaGa-------CCGCCACGCaa----UG- -5'
14258 5' -56.9 NC_003521.1 + 92019 0.67 0.898758
Target:  5'- gGCGcGGCGGCggcGGCGGUGgGUc-- -3'
miRNA:   3'- -UGCuCUGCCGagaCCGCCACgCAaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.