miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14264 5' -58.2 NC_003521.1 + 33129 0.66 0.880942
Target:  5'- gGCCUuCuCCAGCACGCcgaugacgaagccguUGGCCUcgUCGg -3'
miRNA:   3'- aCGGAcG-GGUUGUGCG---------------ACCGGA--AGUa -5'
14264 5' -58.2 NC_003521.1 + 112313 0.66 0.878162
Target:  5'- -aCCUGCCCAGCGacucgcuguCGCaGGCCggCGc -3'
miRNA:   3'- acGGACGGGUUGU---------GCGaCCGGaaGUa -5'
14264 5' -58.2 NC_003521.1 + 144897 0.66 0.878162
Target:  5'- aUGCUgcggGCCCAcgGCAUGCcggUGGCCgaggagUUCAUg -3'
miRNA:   3'- -ACGGa---CGGGU--UGUGCG---ACCGG------AAGUA- -5'
14264 5' -58.2 NC_003521.1 + 212480 0.66 0.878162
Target:  5'- gGCCcgugGCCC-ACACGCacaUGGCCgaCGa -3'
miRNA:   3'- aCGGa---CGGGuUGUGCG---ACCGGaaGUa -5'
14264 5' -58.2 NC_003521.1 + 205180 0.66 0.878162
Target:  5'- cGCCUGCCgcucgCAGCGCGUgcgGGaCCUgCGa -3'
miRNA:   3'- aCGGACGG-----GUUGUGCGa--CC-GGAaGUa -5'
14264 5' -58.2 NC_003521.1 + 111700 0.66 0.871066
Target:  5'- cGCCUGCCUGACguaccuGCGCgagaCCUUCGa -3'
miRNA:   3'- aCGGACGGGUUG------UGCGacc-GGAAGUa -5'
14264 5' -58.2 NC_003521.1 + 208730 0.66 0.871066
Target:  5'- cGCC-GCCaaacgCAugGCGCUGGCCg---- -3'
miRNA:   3'- aCGGaCGG-----GUugUGCGACCGGaagua -5'
14264 5' -58.2 NC_003521.1 + 16416 0.66 0.871066
Target:  5'- cGCCUGgCCGGCGagguguaccgGCUGGCCgaCGa -3'
miRNA:   3'- aCGGACgGGUUGUg---------CGACCGGaaGUa -5'
14264 5' -58.2 NC_003521.1 + 36939 0.66 0.871066
Target:  5'- cUGCCgucauggGCCCG--ACGCUGGUCgUCGc -3'
miRNA:   3'- -ACGGa------CGGGUugUGCGACCGGaAGUa -5'
14264 5' -58.2 NC_003521.1 + 240154 0.66 0.863764
Target:  5'- cGCUgGCUCAugGCGUcGGCCUgagCGUa -3'
miRNA:   3'- aCGGaCGGGUugUGCGaCCGGAa--GUA- -5'
14264 5' -58.2 NC_003521.1 + 177340 0.66 0.863764
Target:  5'- cGCCcgGUCCAGgACGCUGGagauggaCUUCu- -3'
miRNA:   3'- aCGGa-CGGGUUgUGCGACCg------GAAGua -5'
14264 5' -58.2 NC_003521.1 + 39926 0.66 0.863764
Target:  5'- cGCUgGCUCAugGCGUcGGCCUgagCGUa -3'
miRNA:   3'- aCGGaCGGGUugUGCGaCCGGAa--GUA- -5'
14264 5' -58.2 NC_003521.1 + 36574 0.66 0.863764
Target:  5'- aGCCUcCCCAuGCGCGaaCUGGCCUggCGg -3'
miRNA:   3'- aCGGAcGGGU-UGUGC--GACCGGAa-GUa -5'
14264 5' -58.2 NC_003521.1 + 74869 0.66 0.863764
Target:  5'- aGCCUGCCCgAGCACGacacGGCgCUgcugCGc -3'
miRNA:   3'- aCGGACGGG-UUGUGCga--CCG-GAa---GUa -5'
14264 5' -58.2 NC_003521.1 + 204393 0.66 0.856262
Target:  5'- aUGCa-GCCCuGCACGUacgaGGCCUUCu- -3'
miRNA:   3'- -ACGgaCGGGuUGUGCGa---CCGGAAGua -5'
14264 5' -58.2 NC_003521.1 + 107487 0.66 0.856262
Target:  5'- cGuCCggcGCCCAgaGCACaCUGGUCUUCGg -3'
miRNA:   3'- aC-GGa--CGGGU--UGUGcGACCGGAAGUa -5'
14264 5' -58.2 NC_003521.1 + 151784 0.66 0.856262
Target:  5'- cGCCUGCagguaCAGCAUGaaggUGGCCggCAc -3'
miRNA:   3'- aCGGACGg----GUUGUGCg---ACCGGaaGUa -5'
14264 5' -58.2 NC_003521.1 + 129776 0.66 0.855501
Target:  5'- cGCCUGuCCCGcgcacguGCGCGCcgaGGCCgaccgcgUCAa -3'
miRNA:   3'- aCGGAC-GGGU-------UGUGCGa--CCGGa------AGUa -5'
14264 5' -58.2 NC_003521.1 + 214563 0.66 0.848566
Target:  5'- gUGCCUgggGUgCAGCAgCGCUGGCgUUCc- -3'
miRNA:   3'- -ACGGA---CGgGUUGU-GCGACCGgAAGua -5'
14264 5' -58.2 NC_003521.1 + 43295 0.66 0.848566
Target:  5'- aGCCUGCUgAACcUGCUGGUCagcUCGg -3'
miRNA:   3'- aCGGACGGgUUGuGCGACCGGa--AGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.