miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14269 3' -56 NC_003521.1 + 124923 0.66 0.96407
Target:  5'- cGCGAGcUGAcccaGGCCUUcccgGGCCUGGa- -3'
miRNA:   3'- -CGCUCuACUcg--CCGGAG----UUGGACCac -5'
14269 3' -56 NC_003521.1 + 184360 0.66 0.96407
Target:  5'- gGCGGGccGUGGcGCGGCgccuCUCGgACCUGGg- -3'
miRNA:   3'- -CGCUC--UACU-CGCCG----GAGU-UGGACCac -5'
14269 3' -56 NC_003521.1 + 206145 0.66 0.962761
Target:  5'- cGCGcaGGAggacugccucuacGAGCuGGCCUcCGACCUGGg- -3'
miRNA:   3'- -CGC--UCUa------------CUCG-CCGGA-GUUGGACCac -5'
14269 3' -56 NC_003521.1 + 102968 0.66 0.960735
Target:  5'- gGCGucggggcucuGGcgGGGCGGCC-CAGCCgcgGcGUGa -3'
miRNA:   3'- -CGC----------UCuaCUCGCCGGaGUUGGa--C-CAC- -5'
14269 3' -56 NC_003521.1 + 88784 0.66 0.960735
Target:  5'- uGCG-GGUGaAGCaccGCUgCGGCCUGGUGa -3'
miRNA:   3'- -CGCuCUAC-UCGc--CGGaGUUGGACCAC- -5'
14269 3' -56 NC_003521.1 + 127384 0.66 0.957192
Target:  5'- uGCGuGAUGAaggGCGGCCaCAGgC-GGUGg -3'
miRNA:   3'- -CGCuCUACU---CGCCGGaGUUgGaCCAC- -5'
14269 3' -56 NC_003521.1 + 76214 0.66 0.957192
Target:  5'- gGUGGuAUGAGUGGCggCGGCC-GGUGg -3'
miRNA:   3'- -CGCUcUACUCGCCGgaGUUGGaCCAC- -5'
14269 3' -56 NC_003521.1 + 213439 0.66 0.956826
Target:  5'- aCGAGAUccccGUGGCCUgGccccccggcuggaGCCUGGUGc -3'
miRNA:   3'- cGCUCUAcu--CGCCGGAgU-------------UGGACCAC- -5'
14269 3' -56 NC_003521.1 + 14351 0.66 0.953437
Target:  5'- cGCGAccaguaccuGGUGcuGGUGGCCcaCAACCUGGa- -3'
miRNA:   3'- -CGCU---------CUAC--UCGCCGGa-GUUGGACCac -5'
14269 3' -56 NC_003521.1 + 223110 0.66 0.953437
Target:  5'- uGCGGGAUG-GCGGCCgucucgcgCAgcACCaGGa- -3'
miRNA:   3'- -CGCUCUACuCGCCGGa-------GU--UGGaCCac -5'
14269 3' -56 NC_003521.1 + 60138 0.66 0.95305
Target:  5'- aGCGAGGaggugucGAGCacgcaGGCCUCGcgccaacGCCUGGa- -3'
miRNA:   3'- -CGCUCUa------CUCG-----CCGGAGU-------UGGACCac -5'
14269 3' -56 NC_003521.1 + 206243 0.66 0.945276
Target:  5'- cGCGcc-UGcAGCccGGCgUCAGCCUGGUGc -3'
miRNA:   3'- -CGCucuAC-UCG--CCGgAGUUGGACCAC- -5'
14269 3' -56 NC_003521.1 + 60250 0.66 0.945276
Target:  5'- uGCaGGAcuUGAucgacGUGGCCcaCGACCUGGUGg -3'
miRNA:   3'- -CGcUCU--ACU-----CGCCGGa-GUUGGACCAC- -5'
14269 3' -56 NC_003521.1 + 109658 0.67 0.940865
Target:  5'- cGCGAGAUGAugcagacguaGCGGCggaugcgaUCGGCCgaggGGUc -3'
miRNA:   3'- -CGCUCUACU----------CGCCGg-------AGUUGGa---CCAc -5'
14269 3' -56 NC_003521.1 + 19558 0.67 0.940865
Target:  5'- aUGAGcGUGuGCGGCUUCugcuGgCUGGUGu -3'
miRNA:   3'- cGCUC-UACuCGCCGGAGu---UgGACCAC- -5'
14269 3' -56 NC_003521.1 + 154868 0.67 0.938111
Target:  5'- aCGAGu---GCGGCCUCAugCUgcgcuacaugcugcaGGUGg -3'
miRNA:   3'- cGCUCuacuCGCCGGAGUugGA---------------CCAC- -5'
14269 3' -56 NC_003521.1 + 87002 0.67 0.93623
Target:  5'- gGCGGuGAUGAG-GGCCaCGugCUGGaUGa -3'
miRNA:   3'- -CGCU-CUACUCgCCGGaGUugGACC-AC- -5'
14269 3' -56 NC_003521.1 + 137091 0.67 0.926284
Target:  5'- cGCGGcGGUGcuGCGGCacCUgAACCUGGUu -3'
miRNA:   3'- -CGCU-CUACu-CGCCG--GAgUUGGACCAc -5'
14269 3' -56 NC_003521.1 + 165447 0.67 0.926284
Target:  5'- gGCGAGggGuGGCaGGCCUUGagcACCaGGUGg -3'
miRNA:   3'- -CGCUCuaC-UCG-CCGGAGU---UGGaCCAC- -5'
14269 3' -56 NC_003521.1 + 137267 0.67 0.920972
Target:  5'- aGCGGGcaGAGCgggGGCCccagCGACCUGGa- -3'
miRNA:   3'- -CGCUCuaCUCG---CCGGa---GUUGGACCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.