Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14269 | 3' | -56 | NC_003521.1 | + | 184360 | 0.66 | 0.96407 |
Target: 5'- gGCGGGccGUGGcGCGGCgccuCUCGgACCUGGg- -3' miRNA: 3'- -CGCUC--UACU-CGCCG----GAGU-UGGACCac -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 124923 | 0.66 | 0.96407 |
Target: 5'- cGCGAGcUGAcccaGGCCUUcccgGGCCUGGa- -3' miRNA: 3'- -CGCUCuACUcg--CCGGAG----UUGGACCac -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 206145 | 0.66 | 0.962761 |
Target: 5'- cGCGcaGGAggacugccucuacGAGCuGGCCUcCGACCUGGg- -3' miRNA: 3'- -CGC--UCUa------------CUCG-CCGGA-GUUGGACCac -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 102968 | 0.66 | 0.960735 |
Target: 5'- gGCGucggggcucuGGcgGGGCGGCC-CAGCCgcgGcGUGa -3' miRNA: 3'- -CGC----------UCuaCUCGCCGGaGUUGGa--C-CAC- -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 88784 | 0.66 | 0.960735 |
Target: 5'- uGCG-GGUGaAGCaccGCUgCGGCCUGGUGa -3' miRNA: 3'- -CGCuCUAC-UCGc--CGGaGUUGGACCAC- -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 76214 | 0.66 | 0.957192 |
Target: 5'- gGUGGuAUGAGUGGCggCGGCC-GGUGg -3' miRNA: 3'- -CGCUcUACUCGCCGgaGUUGGaCCAC- -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 127384 | 0.66 | 0.957192 |
Target: 5'- uGCGuGAUGAaggGCGGCCaCAGgC-GGUGg -3' miRNA: 3'- -CGCuCUACU---CGCCGGaGUUgGaCCAC- -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 213439 | 0.66 | 0.956826 |
Target: 5'- aCGAGAUccccGUGGCCUgGccccccggcuggaGCCUGGUGc -3' miRNA: 3'- cGCUCUAcu--CGCCGGAgU-------------UGGACCAC- -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 223110 | 0.66 | 0.953437 |
Target: 5'- uGCGGGAUG-GCGGCCgucucgcgCAgcACCaGGa- -3' miRNA: 3'- -CGCUCUACuCGCCGGa-------GU--UGGaCCac -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 14351 | 0.66 | 0.953437 |
Target: 5'- cGCGAccaguaccuGGUGcuGGUGGCCcaCAACCUGGa- -3' miRNA: 3'- -CGCU---------CUAC--UCGCCGGa-GUUGGACCac -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 60138 | 0.66 | 0.95305 |
Target: 5'- aGCGAGGaggugucGAGCacgcaGGCCUCGcgccaacGCCUGGa- -3' miRNA: 3'- -CGCUCUa------CUCG-----CCGGAGU-------UGGACCac -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 60250 | 0.66 | 0.945276 |
Target: 5'- uGCaGGAcuUGAucgacGUGGCCcaCGACCUGGUGg -3' miRNA: 3'- -CGcUCU--ACU-----CGCCGGa-GUUGGACCAC- -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 206243 | 0.66 | 0.945276 |
Target: 5'- cGCGcc-UGcAGCccGGCgUCAGCCUGGUGc -3' miRNA: 3'- -CGCucuAC-UCG--CCGgAGUUGGACCAC- -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 109658 | 0.67 | 0.940865 |
Target: 5'- cGCGAGAUGAugcagacguaGCGGCggaugcgaUCGGCCgaggGGUc -3' miRNA: 3'- -CGCUCUACU----------CGCCGg-------AGUUGGa---CCAc -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 19558 | 0.67 | 0.940865 |
Target: 5'- aUGAGcGUGuGCGGCUUCugcuGgCUGGUGu -3' miRNA: 3'- cGCUC-UACuCGCCGGAGu---UgGACCAC- -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 154868 | 0.67 | 0.938111 |
Target: 5'- aCGAGu---GCGGCCUCAugCUgcgcuacaugcugcaGGUGg -3' miRNA: 3'- cGCUCuacuCGCCGGAGUugGA---------------CCAC- -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 87002 | 0.67 | 0.93623 |
Target: 5'- gGCGGuGAUGAG-GGCCaCGugCUGGaUGa -3' miRNA: 3'- -CGCU-CUACUCgCCGGaGUugGACC-AC- -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 137091 | 0.67 | 0.926284 |
Target: 5'- cGCGGcGGUGcuGCGGCacCUgAACCUGGUu -3' miRNA: 3'- -CGCU-CUACu-CGCCG--GAgUUGGACCAc -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 165447 | 0.67 | 0.926284 |
Target: 5'- gGCGAGggGuGGCaGGCCUUGagcACCaGGUGg -3' miRNA: 3'- -CGCUCuaC-UCG-CCGGAGU---UGGaCCAC- -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 137267 | 0.67 | 0.920972 |
Target: 5'- aGCGGGcaGAGCgggGGCCccagCGACCUGGa- -3' miRNA: 3'- -CGCUCuaCUCG---CCGGa---GUUGGACCac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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