miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14272 3' -63.5 NC_003521.1 + 239767 0.67 0.627455
Target:  5'- aGCUGGCGCaggucGGUGGCCCcGACgcCGGc- -3'
miRNA:   3'- -CGGCCGCG-----CCGCCGGGuCUGa-GCUcu -5'
14272 3' -63.5 NC_003521.1 + 238446 0.7 0.489898
Target:  5'- gGCaggaGGCGCagGGCGGCCUcGGCgggCGGGGc -3'
miRNA:   3'- -CGg---CCGCG--CCGCCGGGuCUGa--GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 237167 0.69 0.50491
Target:  5'- cCCGGCcgccgaggcagacgGCGGCGGCCguGGCacgcuaGAGAa -3'
miRNA:   3'- cGGCCG--------------CGCCGCCGGguCUGag----CUCU- -5'
14272 3' -63.5 NC_003521.1 + 236486 0.79 0.138573
Target:  5'- cGCCGGCgGCGGUGGCgCCAGGCauggacggUCGAGc -3'
miRNA:   3'- -CGGCCG-CGCCGCCG-GGUCUG--------AGCUCu -5'
14272 3' -63.5 NC_003521.1 + 225585 0.68 0.571347
Target:  5'- cCUGGCGCucGGCGGCCuCGcGCUCGGc- -3'
miRNA:   3'- cGGCCGCG--CCGCCGG-GUcUGAGCUcu -5'
14272 3' -63.5 NC_003521.1 + 224737 0.66 0.71136
Target:  5'- cGCCGaCGCaGGCGGCCagcGCgUCGGGGc -3'
miRNA:   3'- -CGGCcGCG-CCGCCGGgucUG-AGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 224012 0.71 0.406322
Target:  5'- -gCGGCaGCGGCgGGCCCGGcGgUCGGGGc -3'
miRNA:   3'- cgGCCG-CGCCG-CCGGGUC-UgAGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 223720 0.66 0.702172
Target:  5'- cGCCGGguaCGaCGGCgGGUCCGGuggCGGGAa -3'
miRNA:   3'- -CGGCC---GC-GCCG-CCGGGUCugaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 223476 0.71 0.414276
Target:  5'- cGCCGGCGUcaCGGCCCGGGaggUGGGGc -3'
miRNA:   3'- -CGGCCGCGccGCCGGGUCUga-GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 221906 0.71 0.447026
Target:  5'- uGCCGGCGC-GCGGCgCCAcccUUCGGGGc -3'
miRNA:   3'- -CGGCCGCGcCGCCG-GGUcu-GAGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 218716 0.66 0.729558
Target:  5'- cGgCGGCgGCGGCGGgCgAGAagcggcgUCGGGAc -3'
miRNA:   3'- -CgGCCG-CGCCGCCgGgUCUg------AGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 218476 0.75 0.240691
Target:  5'- cGUgGGCGCaGUGGcCCCGGACgUCGGGAa -3'
miRNA:   3'- -CGgCCGCGcCGCC-GGGUCUG-AGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 216206 0.66 0.726845
Target:  5'- aCCGGCGCGG-GGUCCuccuggcacacgcAGACgaggccuacgagCGGGAg -3'
miRNA:   3'- cGGCCGCGCCgCCGGG-------------UCUGa-----------GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 214823 0.66 0.710443
Target:  5'- gGCgCGGCGaCGGCGGuUCCAuGCUguuugcugcccggCGAGAg -3'
miRNA:   3'- -CG-GCCGC-GCCGCC-GGGUcUGA-------------GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 214510 0.7 0.487271
Target:  5'- aGCCGGCccuggaagcGCGGacagcgcguggcccUGGCCUGGcCUCGAGAc -3'
miRNA:   3'- -CGGCCG---------CGCC--------------GCCGGGUCuGAGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 212888 0.7 0.463932
Target:  5'- cGCgGGCGaCGGgGGUgUcgguGGACUCGAGGa -3'
miRNA:   3'- -CGgCCGC-GCCgCCGgG----UCUGAGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 210757 0.76 0.220113
Target:  5'- gGCCGGCGgGGaCGGCaCAGACU-GAGAc -3'
miRNA:   3'- -CGGCCGCgCC-GCCGgGUCUGAgCUCU- -5'
14272 3' -63.5 NC_003521.1 + 210425 0.66 0.71136
Target:  5'- gGUCGGCGUgGGCGGCgaCGGcagcguacuguGCUaCGAGAu -3'
miRNA:   3'- -CGGCCGCG-CCGCCGg-GUC-----------UGA-GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 209205 0.69 0.525527
Target:  5'- cGUCGGcCGCGGUGGCCCugccagcuGACccugcCGAGu -3'
miRNA:   3'- -CGGCC-GCGCCGCCGGGu-------CUGa----GCUCu -5'
14272 3' -63.5 NC_003521.1 + 207357 0.75 0.26285
Target:  5'- gGUCGGCGCGGcCGGCCgAcAC-CGAGAa -3'
miRNA:   3'- -CGGCCGCGCC-GCCGGgUcUGaGCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.