Results 41 - 60 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14272 | 5' | -49.6 | NC_003521.1 | + | 214269 | 0.68 | 0.997731 |
Target: 5'- -------cGCccUGACGCCGuCGCUGGc -3' miRNA: 3'- auauaauuCGaaACUGCGGC-GCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 167060 | 0.69 | 0.994115 |
Target: 5'- -------cGCUcaUGACGCCGgUGCCGGc -3' miRNA: 3'- auauaauuCGAa-ACUGCGGC-GCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 166242 | 0.73 | 0.931009 |
Target: 5'- -------cGCgg-GACGCCGCGCCGc -3' miRNA: 3'- auauaauuCGaaaCUGCGGCGCGGCc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 169769 | 0.68 | 0.997731 |
Target: 5'- ------cGGCccaUGGCGCCGCGCUuuGGg -3' miRNA: 3'- auauaauUCGaa-ACUGCGGCGCGG--CC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 197257 | 0.78 | 0.770858 |
Target: 5'- -----gGAGCggugcUUGACGCgGCGCCGGc -3' miRNA: 3'- auauaaUUCGa----AACUGCGgCGCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 75984 | 0.66 | 0.999519 |
Target: 5'- -----gAAGUc-UGGCGCCGgcCGCCGGu -3' miRNA: 3'- auauaaUUCGaaACUGCGGC--GCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 14738 | 0.72 | 0.965097 |
Target: 5'- -cUGUUGGGCgugacgGGCcgGCCGCGgCCGGg -3' miRNA: 3'- auAUAAUUCGaaa---CUG--CGGCGC-GGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 210121 | 0.66 | 0.999405 |
Target: 5'- ----aUGAGCccgcGGCGCCGCGuuGu -3' miRNA: 3'- auauaAUUCGaaa-CUGCGGCGCggCc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 120241 | 0.66 | 0.999405 |
Target: 5'- -----gGAGCc--GGCgGCCGCGCCGu -3' miRNA: 3'- auauaaUUCGaaaCUG-CGGCGCGGCc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 129336 | 0.67 | 0.999103 |
Target: 5'- -----cAGGCggUUGAgCGCCGCGaaGGa -3' miRNA: 3'- auauaaUUCGa-AACU-GCGGCGCggCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 171643 | 0.67 | 0.998909 |
Target: 5'- gUAUGUcuAGC----GCGCCGCGgCGGg -3' miRNA: 3'- -AUAUAauUCGaaacUGCGGCGCgGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 107441 | 0.67 | 0.998679 |
Target: 5'- -----aAAGCgcgGAcCGCCGCGCUGu -3' miRNA: 3'- auauaaUUCGaaaCU-GCGGCGCGGCc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 119199 | 0.67 | 0.99841 |
Target: 5'- -----aAGGacgUGGCGCUGCGCCaGGu -3' miRNA: 3'- auauaaUUCgaaACUGCGGCGCGG-CC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 197335 | 0.68 | 0.99731 |
Target: 5'- gAUGUUGgccgccgcggccAGCacgGcCGCCGCGCUGGc -3' miRNA: 3'- aUAUAAU------------UCGaaaCuGCGGCGCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 110822 | 0.68 | 0.996826 |
Target: 5'- ------cGGCcgUUGcGCGCCGCcGCCGGc -3' miRNA: 3'- auauaauUCGa-AAC-UGCGGCG-CGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 225736 | 0.68 | 0.99564 |
Target: 5'- ----gUAGGCUguUUGAUG-CGCGCCGa -3' miRNA: 3'- auauaAUUCGA--AACUGCgGCGCGGCc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 86529 | 0.69 | 0.994924 |
Target: 5'- ------cGGCcccgGACGCCGUGCCGc -3' miRNA: 3'- auauaauUCGaaa-CUGCGGCGCGGCc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 128961 | 0.69 | 0.993206 |
Target: 5'- -----gGGGCUggcGGCGUgGCGCUGGa -3' miRNA: 3'- auauaaUUCGAaa-CUGCGgCGCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 13917 | 0.69 | 0.992188 |
Target: 5'- -----gGGGCcgcgGAgGCCGCGCUGGc -3' miRNA: 3'- auauaaUUCGaaa-CUgCGGCGCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 165217 | 0.71 | 0.979072 |
Target: 5'- ----cUGAGCcgUGGCGCCGC-CCGa -3' miRNA: 3'- auauaAUUCGaaACUGCGGCGcGGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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