Results 1 - 20 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14280 | 3' | -51.8 | NC_003521.1 | + | 192025 | 0.66 | 0.997927 |
Target: 5'- cGUCAgguUCUGCaccGCCGGCG---UGCGCGg -3' miRNA: 3'- cCAGU---AGAUG---CGGCUGUucuACGCGU- -5' |
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14280 | 3' | -51.8 | NC_003521.1 | + | 150627 | 0.66 | 0.997927 |
Target: 5'- cGG-CGgcugCUGCGCaGGCGGGGgcgUGCGCGa -3' miRNA: 3'- -CCaGUa---GAUGCGgCUGUUCU---ACGCGU- -5' |
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14280 | 3' | -51.8 | NC_003521.1 | + | 116609 | 0.66 | 0.997927 |
Target: 5'- aGUCG-CUGCGgcCCGACAAGGUG-GUg -3' miRNA: 3'- cCAGUaGAUGC--GGCUGUUCUACgCGu -5' |
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14280 | 3' | -51.8 | NC_003521.1 | + | 164929 | 0.66 | 0.997927 |
Target: 5'- --cCAUCcACGCCGACAaguacuucgaucAGGUGCuCAa -3' miRNA: 3'- ccaGUAGaUGCGGCUGU------------UCUACGcGU- -5' |
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14280 | 3' | -51.8 | NC_003521.1 | + | 98652 | 0.66 | 0.997927 |
Target: 5'- cGG-CGUCgACGaCGGCGAGcuUGCGCGg -3' miRNA: 3'- -CCaGUAGaUGCgGCUGUUCu-ACGCGU- -5' |
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14280 | 3' | -51.8 | NC_003521.1 | + | 77849 | 0.66 | 0.997927 |
Target: 5'- uGGggAUCUugGCCaGACGGGcgaugGCGCc -3' miRNA: 3'- -CCagUAGAugCGG-CUGUUCua---CGCGu -5' |
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14280 | 3' | -51.8 | NC_003521.1 | + | 91104 | 0.66 | 0.997927 |
Target: 5'- cGUCGUCgggcACGCCGAgCGAGA-GCuCAc -3' miRNA: 3'- cCAGUAGa---UGCGGCU-GUUCUaCGcGU- -5' |
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14280 | 3' | -51.8 | NC_003521.1 | + | 130792 | 0.66 | 0.997927 |
Target: 5'- gGGUCAcCgcagcGCGCCcACGAGAgccggGUGCAc -3' miRNA: 3'- -CCAGUaGa----UGCGGcUGUUCUa----CGCGU- -5' |
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14280 | 3' | -51.8 | NC_003521.1 | + | 4664 | 0.66 | 0.997927 |
Target: 5'- cGUCcgCUAgguccCGCCGGCGAcGUcGCGCGg -3' miRNA: 3'- cCAGuaGAU-----GCGGCUGUUcUA-CGCGU- -5' |
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14280 | 3' | -51.8 | NC_003521.1 | + | 100085 | 0.66 | 0.997927 |
Target: 5'- cGGgcgCcUCgacCGCCGACGAGGacucGCGCGg -3' miRNA: 3'- -CCa--GuAGau-GCGGCUGUUCUa---CGCGU- -5' |
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14280 | 3' | -51.8 | NC_003521.1 | + | 127459 | 0.66 | 0.997891 |
Target: 5'- uGGcCGUUguugACGCCcGCcagcgccGAGAUGCGCGu -3' miRNA: 3'- -CCaGUAGa---UGCGGcUG-------UUCUACGCGU- -5' |
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14280 | 3' | -51.8 | NC_003521.1 | + | 185322 | 0.66 | 0.997781 |
Target: 5'- uGGUCAaCUACGCCuGGCuggagcaccAGGAggacggcaaggcgGCGCAg -3' miRNA: 3'- -CCAGUaGAUGCGG-CUG---------UUCUa------------CGCGU- -5' |
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14280 | 3' | -51.8 | NC_003521.1 | + | 132790 | 0.66 | 0.997377 |
Target: 5'- cGUCAUCccgccgccgccugACGCCGACGAag-GCGUg -3' miRNA: 3'- cCAGUAGa------------UGCGGCUGUUcuaCGCGu -5' |
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14280 | 3' | -51.8 | NC_003521.1 | + | 174138 | 0.66 | 0.997107 |
Target: 5'- aGGUCA---ACGCCGACAGcacGUGaCGCu -3' miRNA: 3'- -CCAGUagaUGCGGCUGUUc--UAC-GCGu -5' |
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14280 | 3' | -51.8 | NC_003521.1 | + | 223684 | 0.66 | 0.997107 |
Target: 5'- gGGUCGggCgaagcGCGCCGGCAGGAU-CGaCGa -3' miRNA: 3'- -CCAGUa-Ga----UGCGGCUGUUCUAcGC-GU- -5' |
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14280 | 3' | -51.8 | NC_003521.1 | + | 113686 | 0.66 | 0.997107 |
Target: 5'- cGGcgAUCUGCGCCGcCuGGAgGUGCAc -3' miRNA: 3'- -CCagUAGAUGCGGCuGuUCUaCGCGU- -5' |
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14280 | 3' | -51.8 | NC_003521.1 | + | 194941 | 0.66 | 0.997107 |
Target: 5'- cGUCGUCUuggACGCCGGCGcuA-GCGUc -3' miRNA: 3'- cCAGUAGA---UGCGGCUGUucUaCGCGu -5' |
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14280 | 3' | -51.8 | NC_003521.1 | + | 111700 | 0.66 | 0.997107 |
Target: 5'- aGUCGg--ACGCCGACGuccAGuccGUGCGCc -3' miRNA: 3'- cCAGUagaUGCGGCUGU---UC---UACGCGu -5' |
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14280 | 3' | -51.8 | NC_003521.1 | + | 214826 | 0.66 | 0.996814 |
Target: 5'- gGGUCugcggcgCUGCGgcuucaucaccgugcCCGACGAGGUGCcCAa -3' miRNA: 3'- -CCAGua-----GAUGC---------------GGCUGUUCUACGcGU- -5' |
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14280 | 3' | -51.8 | NC_003521.1 | + | 33300 | 0.66 | 0.996605 |
Target: 5'- -cUCGUacAUGCCGGCgAAGGUGUGCu -3' miRNA: 3'- ccAGUAgaUGCGGCUG-UUCUACGCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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