miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14280 3' -51.8 NC_003521.1 + 192025 0.66 0.997927
Target:  5'- cGUCAgguUCUGCaccGCCGGCG---UGCGCGg -3'
miRNA:   3'- cCAGU---AGAUG---CGGCUGUucuACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 150627 0.66 0.997927
Target:  5'- cGG-CGgcugCUGCGCaGGCGGGGgcgUGCGCGa -3'
miRNA:   3'- -CCaGUa---GAUGCGgCUGUUCU---ACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 116609 0.66 0.997927
Target:  5'- aGUCG-CUGCGgcCCGACAAGGUG-GUg -3'
miRNA:   3'- cCAGUaGAUGC--GGCUGUUCUACgCGu -5'
14280 3' -51.8 NC_003521.1 + 164929 0.66 0.997927
Target:  5'- --cCAUCcACGCCGACAaguacuucgaucAGGUGCuCAa -3'
miRNA:   3'- ccaGUAGaUGCGGCUGU------------UCUACGcGU- -5'
14280 3' -51.8 NC_003521.1 + 98652 0.66 0.997927
Target:  5'- cGG-CGUCgACGaCGGCGAGcuUGCGCGg -3'
miRNA:   3'- -CCaGUAGaUGCgGCUGUUCu-ACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 77849 0.66 0.997927
Target:  5'- uGGggAUCUugGCCaGACGGGcgaugGCGCc -3'
miRNA:   3'- -CCagUAGAugCGG-CUGUUCua---CGCGu -5'
14280 3' -51.8 NC_003521.1 + 91104 0.66 0.997927
Target:  5'- cGUCGUCgggcACGCCGAgCGAGA-GCuCAc -3'
miRNA:   3'- cCAGUAGa---UGCGGCU-GUUCUaCGcGU- -5'
14280 3' -51.8 NC_003521.1 + 130792 0.66 0.997927
Target:  5'- gGGUCAcCgcagcGCGCCcACGAGAgccggGUGCAc -3'
miRNA:   3'- -CCAGUaGa----UGCGGcUGUUCUa----CGCGU- -5'
14280 3' -51.8 NC_003521.1 + 4664 0.66 0.997927
Target:  5'- cGUCcgCUAgguccCGCCGGCGAcGUcGCGCGg -3'
miRNA:   3'- cCAGuaGAU-----GCGGCUGUUcUA-CGCGU- -5'
14280 3' -51.8 NC_003521.1 + 100085 0.66 0.997927
Target:  5'- cGGgcgCcUCgacCGCCGACGAGGacucGCGCGg -3'
miRNA:   3'- -CCa--GuAGau-GCGGCUGUUCUa---CGCGU- -5'
14280 3' -51.8 NC_003521.1 + 127459 0.66 0.997891
Target:  5'- uGGcCGUUguugACGCCcGCcagcgccGAGAUGCGCGu -3'
miRNA:   3'- -CCaGUAGa---UGCGGcUG-------UUCUACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 185322 0.66 0.997781
Target:  5'- uGGUCAaCUACGCCuGGCuggagcaccAGGAggacggcaaggcgGCGCAg -3'
miRNA:   3'- -CCAGUaGAUGCGG-CUG---------UUCUa------------CGCGU- -5'
14280 3' -51.8 NC_003521.1 + 132790 0.66 0.997377
Target:  5'- cGUCAUCccgccgccgccugACGCCGACGAag-GCGUg -3'
miRNA:   3'- cCAGUAGa------------UGCGGCUGUUcuaCGCGu -5'
14280 3' -51.8 NC_003521.1 + 174138 0.66 0.997107
Target:  5'- aGGUCA---ACGCCGACAGcacGUGaCGCu -3'
miRNA:   3'- -CCAGUagaUGCGGCUGUUc--UAC-GCGu -5'
14280 3' -51.8 NC_003521.1 + 223684 0.66 0.997107
Target:  5'- gGGUCGggCgaagcGCGCCGGCAGGAU-CGaCGa -3'
miRNA:   3'- -CCAGUa-Ga----UGCGGCUGUUCUAcGC-GU- -5'
14280 3' -51.8 NC_003521.1 + 113686 0.66 0.997107
Target:  5'- cGGcgAUCUGCGCCGcCuGGAgGUGCAc -3'
miRNA:   3'- -CCagUAGAUGCGGCuGuUCUaCGCGU- -5'
14280 3' -51.8 NC_003521.1 + 194941 0.66 0.997107
Target:  5'- cGUCGUCUuggACGCCGGCGcuA-GCGUc -3'
miRNA:   3'- cCAGUAGA---UGCGGCUGUucUaCGCGu -5'
14280 3' -51.8 NC_003521.1 + 111700 0.66 0.997107
Target:  5'- aGUCGg--ACGCCGACGuccAGuccGUGCGCc -3'
miRNA:   3'- cCAGUagaUGCGGCUGU---UC---UACGCGu -5'
14280 3' -51.8 NC_003521.1 + 214826 0.66 0.996814
Target:  5'- gGGUCugcggcgCUGCGgcuucaucaccgugcCCGACGAGGUGCcCAa -3'
miRNA:   3'- -CCAGua-----GAUGC---------------GGCUGUUCUACGcGU- -5'
14280 3' -51.8 NC_003521.1 + 33300 0.66 0.996605
Target:  5'- -cUCGUacAUGCCGGCgAAGGUGUGCu -3'
miRNA:   3'- ccAGUAgaUGCGGCUG-UUCUACGCGu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.