miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14280 5' -53.9 NC_003521.1 + 236233 0.67 0.96915
Target:  5'- cCCGCGCGGCCCGuuAGCAa------ -3'
miRNA:   3'- uGGUGCGUCGGGCugUUGUacuagac -5'
14280 5' -53.9 NC_003521.1 + 235610 0.68 0.955636
Target:  5'- gACUcggGCGgAGCCCGACcGCGUGGUg-- -3'
miRNA:   3'- -UGG---UGCgUCGGGCUGuUGUACUAgac -5'
14280 5' -53.9 NC_003521.1 + 232853 0.67 0.966089
Target:  5'- cGCCGCGgaccccuccCGGCCgCGACAccGCGgcGAUCUGg -3'
miRNA:   3'- -UGGUGC---------GUCGG-GCUGU--UGUa-CUAGAC- -5'
14280 5' -53.9 NC_003521.1 + 228990 0.66 0.986928
Target:  5'- gGCgGCGCAGgaCCGGCAGCAcgGAgCUa -3'
miRNA:   3'- -UGgUGCGUCg-GGCUGUUGUa-CUaGAc -5'
14280 5' -53.9 NC_003521.1 + 228568 0.7 0.886597
Target:  5'- cACCGgacUGCAGCUCGGCAGCgagaGUGAggUCUGc -3'
miRNA:   3'- -UGGU---GCGUCGGGCUGUUG----UACU--AGAC- -5'
14280 5' -53.9 NC_003521.1 + 227632 0.68 0.947565
Target:  5'- -aCACgGCGGCCCGAgCGGCAcgccUGGUCa- -3'
miRNA:   3'- ugGUG-CGUCGGGCU-GUUGU----ACUAGac -5'
14280 5' -53.9 NC_003521.1 + 227508 0.67 0.972009
Target:  5'- uGCCACggcagGCAGCCCaGGCu-CAUguugGAUCUGg -3'
miRNA:   3'- -UGGUG-----CGUCGGG-CUGuuGUA----CUAGAC- -5'
14280 5' -53.9 NC_003521.1 + 222365 0.69 0.923347
Target:  5'- cGCCGCGCAGCCCGcggucgaaGCGGCAc------ -3'
miRNA:   3'- -UGGUGCGUCGGGC--------UGUUGUacuagac -5'
14280 5' -53.9 NC_003521.1 + 222095 0.69 0.938578
Target:  5'- cGCCcUGCAGCgCCGGCAGCGUcucGAggcgCUGc -3'
miRNA:   3'- -UGGuGCGUCG-GGCUGUUGUA---CUa---GAC- -5'
14280 5' -53.9 NC_003521.1 + 222030 0.66 0.986928
Target:  5'- gGCCACGCgaaagcagcgcuGGCCCucCAccgccuGCGUGGUCUc -3'
miRNA:   3'- -UGGUGCG------------UCGGGcuGU------UGUACUAGAc -5'
14280 5' -53.9 NC_003521.1 + 221357 0.66 0.983502
Target:  5'- cACCugGCcGCgCaGCGACAUGGUCc- -3'
miRNA:   3'- -UGGugCGuCGgGcUGUUGUACUAGac -5'
14280 5' -53.9 NC_003521.1 + 211002 0.66 0.985291
Target:  5'- uCUGCaGCGuGCCCGACAagACAUGAUUcuUGa -3'
miRNA:   3'- uGGUG-CGU-CGGGCUGU--UGUACUAG--AC- -5'
14280 5' -53.9 NC_003521.1 + 204308 0.73 0.76293
Target:  5'- gACCGgcgggugacCGCAGUCCGACGcCAUGGUCg- -3'
miRNA:   3'- -UGGU---------GCGUCGGGCUGUuGUACUAGac -5'
14280 5' -53.9 NC_003521.1 + 204000 0.69 0.923347
Target:  5'- aGCaGCGcCGGCCCGugGcGCGUGAUCa- -3'
miRNA:   3'- -UGgUGC-GUCGGGCugU-UGUACUAGac -5'
14280 5' -53.9 NC_003521.1 + 203695 0.66 0.983502
Target:  5'- aGCCGCGCGGCauGuugcGCGcCGUGAUCUu -3'
miRNA:   3'- -UGGUGCGUCGggC----UGUuGUACUAGAc -5'
14280 5' -53.9 NC_003521.1 + 201260 0.7 0.886597
Target:  5'- cGCCGCGCAGCCaGAUGGCcgGcGUCg- -3'
miRNA:   3'- -UGGUGCGUCGGgCUGUUGuaC-UAGac -5'
14280 5' -53.9 NC_003521.1 + 197447 0.66 0.979438
Target:  5'- gGCCAgGCGGCgCCaGCG-CAUGcUCUGg -3'
miRNA:   3'- -UGGUgCGUCG-GGcUGUuGUACuAGAC- -5'
14280 5' -53.9 NC_003521.1 + 196055 0.66 0.985291
Target:  5'- cACCGgGCGGaaggCCGGCGAgGUGGaCUGg -3'
miRNA:   3'- -UGGUgCGUCg---GGCUGUUgUACUaGAC- -5'
14280 5' -53.9 NC_003521.1 + 195316 0.69 0.917801
Target:  5'- uCCAUGCGGCUCGACGgcgACGUGuagaaggCUGc -3'
miRNA:   3'- uGGUGCGUCGGGCUGU---UGUACua-----GAC- -5'
14280 5' -53.9 NC_003521.1 + 190944 0.7 0.87968
Target:  5'- cACCACGCAcGCCaCGACcgccauCAUGAgcaugCUGg -3'
miRNA:   3'- -UGGUGCGU-CGG-GCUGuu----GUACUa----GAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.