miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14283 3' -46.4 NC_003521.1 + 75904 0.66 0.999999
Target:  5'- uGUcGgCGUgGAUGGGCACGuugugcucgcgcACGUACGu -3'
miRNA:   3'- -CAuUgGCAaUUACUCGUGC------------UGCAUGC- -5'
14283 3' -46.4 NC_003521.1 + 78833 0.66 0.999999
Target:  5'- cGUAACgGUUAcgGAGCACcagccgaagGugGUGa- -3'
miRNA:   3'- -CAUUGgCAAUuaCUCGUG---------CugCAUgc -5'
14283 3' -46.4 NC_003521.1 + 104693 0.66 0.999999
Target:  5'- -gGGCCGUgggc-GGCGuCGACGUGCc -3'
miRNA:   3'- caUUGGCAauuacUCGU-GCUGCAUGc -5'
14283 3' -46.4 NC_003521.1 + 198028 0.66 0.999999
Target:  5'- cGUGGCCGcUGccGAGCGUGA-GUACGa -3'
miRNA:   3'- -CAUUGGCaAUuaCUCGUGCUgCAUGC- -5'
14283 3' -46.4 NC_003521.1 + 101210 0.66 0.999999
Target:  5'- uUGACCGa-GAUGuGCACGuuuuugGCGUugGa -3'
miRNA:   3'- cAUUGGCaaUUACuCGUGC------UGCAugC- -5'
14283 3' -46.4 NC_003521.1 + 111190 0.66 0.999999
Target:  5'- cGgcGCCGcggacGGUGGGCugGGCGaugGCGc -3'
miRNA:   3'- -CauUGGCaa---UUACUCGugCUGCa--UGC- -5'
14283 3' -46.4 NC_003521.1 + 78125 0.66 0.999999
Target:  5'- uGUAcACC-UUGGUGGGCGCGuuaGCGgcgGCGg -3'
miRNA:   3'- -CAU-UGGcAAUUACUCGUGC---UGCa--UGC- -5'
14283 3' -46.4 NC_003521.1 + 128263 0.66 0.999999
Target:  5'- -aGGCCG-UGGUGGGCAgcGCGuUGCGg -3'
miRNA:   3'- caUUGGCaAUUACUCGUgcUGC-AUGC- -5'
14283 3' -46.4 NC_003521.1 + 221694 0.66 0.999999
Target:  5'- cGUGGgucUCGUUGccGAGCACgcaGugGUACGu -3'
miRNA:   3'- -CAUU---GGCAAUuaCUCGUG---CugCAUGC- -5'
14283 3' -46.4 NC_003521.1 + 89173 0.66 0.999999
Target:  5'- -gGGCCGUgggccUGGcccuGCugGACGUGCu -3'
miRNA:   3'- caUUGGCAauu--ACU----CGugCUGCAUGc -5'
14283 3' -46.4 NC_003521.1 + 114592 0.66 0.999999
Target:  5'- --cACCGUUGAcaugGGGCugGgcuacacgucgaacACGUGCGu -3'
miRNA:   3'- cauUGGCAAUUa---CUCGugC--------------UGCAUGC- -5'
14283 3' -46.4 NC_003521.1 + 35134 0.66 0.999998
Target:  5'- --cGCCGcgAcUGAGCGCGG-GUGCGc -3'
miRNA:   3'- cauUGGCaaUuACUCGUGCUgCAUGC- -5'
14283 3' -46.4 NC_003521.1 + 39175 0.66 0.999998
Target:  5'- cUAGCgUGUUGcUGAcGCGCGACG-ACGa -3'
miRNA:   3'- cAUUG-GCAAUuACU-CGUGCUGCaUGC- -5'
14283 3' -46.4 NC_003521.1 + 152295 0.66 0.999998
Target:  5'- -aGGCCGUUucGGUGcgccuGCACGGC-UGCGa -3'
miRNA:   3'- caUUGGCAA--UUACu----CGUGCUGcAUGC- -5'
14283 3' -46.4 NC_003521.1 + 64861 0.66 0.999997
Target:  5'- -aAGCUGaacg-GGGCGcCGACGUGCGc -3'
miRNA:   3'- caUUGGCaauuaCUCGU-GCUGCAUGC- -5'
14283 3' -46.4 NC_003521.1 + 156478 0.66 0.999997
Target:  5'- -aGACCGgcuccuucGUGGGCAUGcucuCGUACGu -3'
miRNA:   3'- caUUGGCaau-----UACUCGUGCu---GCAUGC- -5'
14283 3' -46.4 NC_003521.1 + 84109 0.66 0.999997
Target:  5'- -aGGCCGUagucgaUAGUGGuGCAC-ACGUGCa -3'
miRNA:   3'- caUUGGCA------AUUACU-CGUGcUGCAUGc -5'
14283 3' -46.4 NC_003521.1 + 214808 0.66 0.999997
Target:  5'- --cGCCGUcGGgcgccGGGCGCGGCG-ACGg -3'
miRNA:   3'- cauUGGCAaUUa----CUCGUGCUGCaUGC- -5'
14283 3' -46.4 NC_003521.1 + 19158 0.67 0.999996
Target:  5'- gGUGACCGa----GAGCAcggcgcugguggcCGACGUGCa -3'
miRNA:   3'- -CAUUGGCaauuaCUCGU-------------GCUGCAUGc -5'
14283 3' -46.4 NC_003521.1 + 117009 0.67 0.999996
Target:  5'- cUggUCGgcgUGAcgGAGCGCGAguCGUACGu -3'
miRNA:   3'- cAuuGGCa--AUUa-CUCGUGCU--GCAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.