miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14283 5' -61.4 NC_003521.1 + 86134 0.66 0.805168
Target:  5'- gCgCGCgUCGCaCACGCGGUAGCgCUCCa- -3'
miRNA:   3'- -GgGCG-AGUG-GUGUGUCGUCG-GGGGca -5'
14283 5' -61.4 NC_003521.1 + 140110 0.66 0.805168
Target:  5'- cCCCGcCUCcuccaucagcgGCCGCgGCGGC-GCCUCCGc -3'
miRNA:   3'- -GGGC-GAG-----------UGGUG-UGUCGuCGGGGGCa -5'
14283 5' -61.4 NC_003521.1 + 4675 0.66 0.805168
Target:  5'- uCCCGCcggCGacgUCGCGCGGUccCCCCCGUc -3'
miRNA:   3'- -GGGCGa--GU---GGUGUGUCGucGGGGGCA- -5'
14283 5' -61.4 NC_003521.1 + 130213 0.66 0.805168
Target:  5'- gCCCGCggUACagAUGCAGCcGCCCUCGc -3'
miRNA:   3'- -GGGCGa-GUGg-UGUGUCGuCGGGGGCa -5'
14283 5' -61.4 NC_003521.1 + 43020 0.66 0.805168
Target:  5'- aUCGUaCACCACACAGCAGUacaCGg -3'
miRNA:   3'- gGGCGaGUGGUGUGUCGUCGgggGCa -5'
14283 5' -61.4 NC_003521.1 + 25180 0.66 0.805168
Target:  5'- uCCCGCcgCgACCAUGCGG-AGCCCCg-- -3'
miRNA:   3'- -GGGCGa-G-UGGUGUGUCgUCGGGGgca -5'
14283 5' -61.4 NC_003521.1 + 59992 0.66 0.805168
Target:  5'- aCCgGCUCuuCAC-CGGCAGCCUgCa- -3'
miRNA:   3'- -GGgCGAGugGUGuGUCGUCGGGgGca -5'
14283 5' -61.4 NC_003521.1 + 236461 0.66 0.805168
Target:  5'- aCCUGCUCgGCCGCA-AGCGGCgaaCCGg -3'
miRNA:   3'- -GGGCGAG-UGGUGUgUCGUCGgg-GGCa -5'
14283 5' -61.4 NC_003521.1 + 114162 0.66 0.805168
Target:  5'- aCCUGCUgGCCAUcguUGGCuGCCUCUGg -3'
miRNA:   3'- -GGGCGAgUGGUGu--GUCGuCGGGGGCa -5'
14283 5' -61.4 NC_003521.1 + 149724 0.66 0.805168
Target:  5'- cCCCGaccggCGCagGCGCAGacgGGCCCCUGUu -3'
miRNA:   3'- -GGGCga---GUGg-UGUGUCg--UCGGGGGCA- -5'
14283 5' -61.4 NC_003521.1 + 212230 0.66 0.805168
Target:  5'- aUgGUggCGgUGCGCAGCAGCCCgCCGUc -3'
miRNA:   3'- gGgCGa-GUgGUGUGUCGUCGGG-GGCA- -5'
14283 5' -61.4 NC_003521.1 + 59376 0.66 0.804337
Target:  5'- gCCGCUggaCGCCGCGCAGCAcuuguacGaCCaCCUGg -3'
miRNA:   3'- gGGCGA---GUGGUGUGUCGU-------C-GG-GGGCa -5'
14283 5' -61.4 NC_003521.1 + 113156 0.66 0.800163
Target:  5'- aCCCGC-CGCCugcuCGCGGCcaagaugggccgcgaGGUgCCCGUc -3'
miRNA:   3'- -GGGCGaGUGGu---GUGUCG---------------UCGgGGGCA- -5'
14283 5' -61.4 NC_003521.1 + 90268 0.66 0.796799
Target:  5'- aCCuaUUugCAUACuaGGUAcGCCCCCGUa -3'
miRNA:   3'- gGGcgAGugGUGUG--UCGU-CGGGGGCA- -5'
14283 5' -61.4 NC_003521.1 + 110059 0.66 0.796799
Target:  5'- uUCUGCUCcCCcgGCGCGGCGcucgcGCCCgCCGa -3'
miRNA:   3'- -GGGCGAGuGG--UGUGUCGU-----CGGG-GGCa -5'
14283 5' -61.4 NC_003521.1 + 19015 0.66 0.796799
Target:  5'- gCCCGCccCGCCgACGgAGCccauGCCCgCCGa -3'
miRNA:   3'- -GGGCGa-GUGG-UGUgUCGu---CGGG-GGCa -5'
14283 5' -61.4 NC_003521.1 + 222047 0.66 0.796799
Target:  5'- aUCgGCggggggCACCAgccguCGCAGCAGCgaCCCGUc -3'
miRNA:   3'- -GGgCGa-----GUGGU-----GUGUCGUCGg-GGGCA- -5'
14283 5' -61.4 NC_003521.1 + 148766 0.66 0.796799
Target:  5'- gUCCGC-CAUCGCuACGGgaGGCaCCCCGg -3'
miRNA:   3'- -GGGCGaGUGGUG-UGUCg-UCG-GGGGCa -5'
14283 5' -61.4 NC_003521.1 + 103226 0.66 0.796799
Target:  5'- gUCGCcgGCCAgGCGGCGGCCCaaGa -3'
miRNA:   3'- gGGCGagUGGUgUGUCGUCGGGggCa -5'
14283 5' -61.4 NC_003521.1 + 75321 0.66 0.796799
Target:  5'- aCUGCgUCACCcagauGCugACGGCGGCCCgCGa -3'
miRNA:   3'- gGGCG-AGUGG-----UG--UGUCGUCGGGgGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.