miRNA display CGI


Results 1 - 20 of 230 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14283 5' -61.4 NC_003521.1 + 8257 1.09 0.001643
Target:  5'- cCCCGCUCACCACACAGCAGCCCCCGUa -3'
miRNA:   3'- -GGGCGAGUGGUGUGUCGUCGGGGGCA- -5'
14283 5' -61.4 NC_003521.1 + 74584 0.71 0.490654
Target:  5'- gCCCGCUCGCCGgGCGGCAucacGCUCUUc- -3'
miRNA:   3'- -GGGCGAGUGGUgUGUCGU----CGGGGGca -5'
14283 5' -61.4 NC_003521.1 + 141636 0.7 0.536276
Target:  5'- cUCCGC-CGCCAC-CuuCAGCCCCCa- -3'
miRNA:   3'- -GGGCGaGUGGUGuGucGUCGGGGGca -5'
14283 5' -61.4 NC_003521.1 + 140110 0.66 0.805168
Target:  5'- cCCCGcCUCcuccaucagcgGCCGCgGCGGC-GCCUCCGc -3'
miRNA:   3'- -GGGC-GAG-----------UGGUG-UGUCGuCGGGGGCa -5'
14283 5' -61.4 NC_003521.1 + 16396 0.73 0.389534
Target:  5'- aCCGCUCgcccACCACGCAGC-GCCUggCCGg -3'
miRNA:   3'- gGGCGAG----UGGUGUGUCGuCGGG--GGCa -5'
14283 5' -61.4 NC_003521.1 + 181564 0.73 0.405435
Target:  5'- gCgCGCUuacgaaCGCC-CGCAGCAGCCCCaCGUu -3'
miRNA:   3'- -GgGCGA------GUGGuGUGUCGUCGGGG-GCA- -5'
14283 5' -61.4 NC_003521.1 + 160329 0.72 0.421738
Target:  5'- gCCGUggGCgGCGCGGUGGCCUCCGUc -3'
miRNA:   3'- gGGCGagUGgUGUGUCGUCGGGGGCA- -5'
14283 5' -61.4 NC_003521.1 + 136927 0.72 0.421738
Target:  5'- uCCCGUUaccugACCGCGCGGCAGCCCa--- -3'
miRNA:   3'- -GGGCGAg----UGGUGUGUCGUCGGGggca -5'
14283 5' -61.4 NC_003521.1 + 130731 0.72 0.455493
Target:  5'- gCCCGCUUACCgcaGCGCGGUagagcuGGCCUUCGg -3'
miRNA:   3'- -GGGCGAGUGG---UGUGUCG------UCGGGGGCa -5'
14283 5' -61.4 NC_003521.1 + 119906 0.71 0.472909
Target:  5'- gCCGCgggcaGCCGCaaacgcaaGCAGCcGCCCCCGa -3'
miRNA:   3'- gGGCGag---UGGUG--------UGUCGuCGGGGGCa -5'
14283 5' -61.4 NC_003521.1 + 22201 0.72 0.455493
Target:  5'- gCCGCUuacCGCCGCGCgcuGGCGGCCgaaCCGUa -3'
miRNA:   3'- gGGCGA---GUGGUGUG---UCGUCGGg--GGCA- -5'
14283 5' -61.4 NC_003521.1 + 187320 0.72 0.43843
Target:  5'- gCCGCUgcgaCGCCGCAgCAGCGGCCUCgaCGUg -3'
miRNA:   3'- gGGCGA----GUGGUGU-GUCGUCGGGG--GCA- -5'
14283 5' -61.4 NC_003521.1 + 183602 0.75 0.296557
Target:  5'- gCCGCUCGCCuCugAGCuacGCCUCCGa -3'
miRNA:   3'- gGGCGAGUGGuGugUCGu--CGGGGGCa -5'
14283 5' -61.4 NC_003521.1 + 90199 0.71 0.472909
Target:  5'- cCCCGC---CUGCGCAGCAGCCgCCGc -3'
miRNA:   3'- -GGGCGaguGGUGUGUCGUCGGgGGCa -5'
14283 5' -61.4 NC_003521.1 + 142409 0.75 0.309666
Target:  5'- cCCCGC-CACCACcggacaauaacaGCAGCAGCgCCgCCGa -3'
miRNA:   3'- -GGGCGaGUGGUG------------UGUCGUCG-GG-GGCa -5'
14283 5' -61.4 NC_003521.1 + 34696 0.72 0.43843
Target:  5'- gCCCGUUCucagcAUCGCGCAGCAGCUgaCCGg -3'
miRNA:   3'- -GGGCGAG-----UGGUGUGUCGUCGGg-GGCa -5'
14283 5' -61.4 NC_003521.1 + 13929 0.71 0.472909
Target:  5'- gCCgCGCUgGCCGC-CGuGguGCCCCCGc -3'
miRNA:   3'- -GG-GCGAgUGGUGuGU-CguCGGGGGCa -5'
14283 5' -61.4 NC_003521.1 + 60425 0.71 0.499641
Target:  5'- gCCGCcagCACCAC-CAGCAGUaCUCCGg -3'
miRNA:   3'- gGGCGa--GUGGUGuGUCGUCG-GGGGCa -5'
14283 5' -61.4 NC_003521.1 + 170683 0.73 0.387185
Target:  5'- gCCgCGCUCGCCGCAgcucgaggcccugaUAGCGGCCCuUCGg -3'
miRNA:   3'- -GG-GCGAGUGGUGU--------------GUCGUCGGG-GGCa -5'
14283 5' -61.4 NC_003521.1 + 103512 0.73 0.413537
Target:  5'- aCUCGgggUCGCCGCGCAGCAGCCgcgccaCCCGc -3'
miRNA:   3'- -GGGCg--AGUGGUGUGUCGUCGG------GGGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.